View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6462_high_1 (Length: 858)
Name: NF6462_high_1
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 781; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 9 - 840
Target Start/End: Complemental strand, 52953764 - 52952933
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953764 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatatccattaaccaaatcaaagcaatgcatgcaacctctattca |
52953665 |
T |
|
| Q |
109 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953664 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
52953565 |
T |
|
| Q |
209 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaactccaatca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52953564 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcgaaatcaatttctgtgcaaaactccaatca |
52953465 |
T |
|
| Q |
309 |
tcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtcattc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953464 |
tcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcagaagatttctcacaagaatgacccacagatgaaaccatttcagtcattc |
52953365 |
T |
|
| Q |
409 |
cagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataacc |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953364 |
cagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataacc |
52953265 |
T |
|
| Q |
509 |
aagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctgagtataagtgaaacttgttctgagatgagagagaagtttttgtgt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953264 |
aagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctgagtataagtgaaacttgttctgagatgagagagaagtttttgtgt |
52953165 |
T |
|
| Q |
609 |
acttggtgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgt |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52953164 |
acttggtgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgt |
52953065 |
T |
|
| Q |
709 |
taacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccca-nnnnnnnncttatgagaaagagaa |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52953064 |
taacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaacccatttttttttcttatgagaaagagaa |
52952965 |
T |
|
| Q |
808 |
gaagaagaacataaagattgagtttcaagtgac |
840 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
52952964 |
gaagaagaacataaa-attgagtttcaagtgac |
52952933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 9 - 840
Target Start/End: Original strand, 31903762 - 31904589
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattca |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31903762 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattca |
31903861 |
T |
|
| Q |
109 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31903862 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatg |
31903961 |
T |
|
| Q |
209 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaactccaatca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| ||||||||||| |
|
|
| T |
31903962 |
aagataatttaccttagaagaaacagatttagcaaaacaccttcttcttggtaaaggctcacaccctttcaaaatcaatttctgagcataactccaatca |
31904061 |
T |
|
| Q |
309 |
tcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtcattc |
408 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
31904062 |
tcttgacaatttccaaatactttgtaattcatatactgggacatcaaatcagaagatttctcacaagaatagcccatagatgaaaccatctcagtcattc |
31904161 |
T |
|
| Q |
409 |
cagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcataacc |
508 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31904162 |
cagttttggaatctttacccaaaggaagtttatgagggttaagaaaaagtttgagctcttttgcaatgttgggtcttgaaagatcaaaactttcatagcc |
31904261 |
T |
|
| Q |
509 |
aagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctgagtataagtgaaacttgttctgagatgagagagaagtttttgtgt |
608 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31904262 |
aagaagctgtttttctatctgggctagtttcttttgagactgatcaatttctctgagtataagtgaaacttgttctgagatgagagagaagtttttgtgt |
31904361 |
T |
|
| Q |
609 |
acttggtgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgt |
708 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31904362 |
acttgatgaagttgttcggtttggttgttttttggagaagaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgt |
31904461 |
T |
|
| Q |
709 |
taacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaacccannnnnnnncttatgagaaagagaag |
808 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
31904462 |
taacaactgaagaacaaagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacagaa-cctttttttttcttatgag---gagaag |
31904557 |
T |
|
| Q |
809 |
aagaagaacataaagattgagtttcaagtgac |
840 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
31904558 |
aagaagaacataaagattgagtttcaagtgac |
31904589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 9 - 213
Target Start/End: Complemental strand, 31673777 - 31673573
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattca |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
31673777 |
acatcagcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattca |
31673678 |
T |
|
| Q |
109 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
31673677 |
atttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttgctaacaggtttccaaagtgaagttggaaaaggatg |
31673578 |
T |
|
| Q |
209 |
aagat |
213 |
Q |
| |
|
||||| |
|
|
| T |
31673577 |
aagat |
31673573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 31921942 - 31922101
Alignment:
| Q |
54 |
ctttgattctcatacccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccac |
153 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31921942 |
ctttgattctcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccac |
31922041 |
T |
|
| Q |
154 |
tccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31922042 |
tccaattaacagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagat |
31922101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 693 - 840
Target Start/End: Complemental strand, 31673577 - 31673428
Alignment:
| Q |
693 |
aagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccca--nnnnnnn |
790 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31673577 |
aagatcatgagaatgttaacaactgaagaacaaagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacagaacccattttttttt |
31673478 |
T |
|
| Q |
791 |
ncttatgagaaagagaagaagaagaacataaagattgagtttcaagtgac |
840 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31673477 |
tcttatgaggaagagaagaagaagaacataaagattgagtttcaagtgac |
31673428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 693 - 840
Target Start/End: Original strand, 31922097 - 31922246
Alignment:
| Q |
693 |
aagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccc--annnnnnn |
790 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31922097 |
aagatcatgagaatgttaacaactgaagaacagagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccctttttttttt |
31922196 |
T |
|
| Q |
791 |
ncttatgagaaagagaagaagaagaacataaagattgagtttcaagtgac |
840 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31922197 |
tcttatgaggaagagaagaagaagaacataaagattgagtttcaagtgac |
31922246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 741 - 783
Target Start/End: Complemental strand, 43071164 - 43071122
Alignment:
| Q |
741 |
aatcttgctgttccatcaccaattttcaaagaaacagaaccca |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43071164 |
aatcttgctgttccatcaccaattttcaaagaaactgaaccca |
43071122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 5e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 9 - 607
Target Start/End: Complemental strand, 7760638 - 7760043
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccat---taaccaaatcaaagcaatgcatgcaacctctat |
105 |
Q |
| |
|
||||||||||| | ||||||||| |||||| | ||||| ||||| || |||||||||| ||| ||||||||||||| |||| | ||| ||||| |
|
|
| T |
7760638 |
acatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctcatttccaccactaaccaaatcaaaacaattaacacaatctctac |
7760539 |
T |
|
| Q |
106 |
tcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaacaggcttccaaagtgaagttggaaaagg |
205 |
Q |
| |
|
|||||||||| || |||||||| |||||| |||||||| | |||||||||||||||| ||| || |||| || |||||||||||| ||| |||||||| |
|
|
| T |
7760538 |
tcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaaaagtgttattaccaagaggcttccaaagagaaacaggaaaagg |
7760439 |
T |
|
| Q |
206 |
atgaagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaaaggctcacaccttttcaaaatcaatttctgtgcaaaactccaa |
305 |
Q |
| |
|
| || | | | | || ||||||| ||| | |||||||||||||||||||||||||||||||| ||| || |||| |||||| || | ||||||| |
|
|
| T |
7760438 |
a--aaaaaacctgatttt----gaaacagtttttgaaaaacaccttcttctaggtaaaggctcacacccttttaagatcagtttctgagctacactccaa |
7760345 |
T |
|
| Q |
306 |
tcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacccacagatgaaaccatttcagtca |
405 |
Q |
| |
|
||||| ||||| |||| | | |||||| |||| |||| |||||||| || | | |||||||||||||||||| || ||||| ||||||||||| | |
|
|
| T |
7760344 |
tcatcaggacaagctccagaagccttgtaactcatgaactgtgacaacaagtctgcacttttctcacaagaatgaccaactgatgacaccatttcagtga |
7760245 |
T |
|
| Q |
406 |
ttccagtcttggaatctttacccaaaggaagtttatgagggttgagaaagagtttaagctcttttgcaatgttgggtcttgaaagatcaaaactttcata |
505 |
Q |
| |
|
| ||||| | ||||| || || |||||||||| ||| | ||| |||| ||| ||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7760244 |
tcccagttcttgaatccttgcctaaaggaagttgatgtctttggaggaagattttcagctcatttgcaatgttgggtcttgaaagatcaatgctttcata |
7760145 |
T |
|
| Q |
506 |
accaagaagctgtttttcaatctgggttagtttcttttgagattgatcaatttctctgagtataagtgaaacttgttctgagatgagagagaagtttttg |
605 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||| ||| || ||||||||||| ||||| ||||||||||||| ||||||| ||||||| |
|
|
| T |
7760144 |
accaagaagctgtttttccatctgggctagtttcttttgagacaaatctatctctctgagtatgagtgagacttgttctgagacaagagagatgtttttg |
7760045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 648 - 783
Target Start/End: Complemental strand, 7759987 - 7759852
Alignment:
| Q |
648 |
gaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttg |
747 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| || | || ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7759987 |
gaagtgaaagcatagagagcaaagagattggttgtgatgacacagaaaatcatgagaatgttaacagctgaagaacaaagtgttgctcttttgaatcttg |
7759888 |
T |
|
| Q |
748 |
ctgttccatcaccaattttcaaagaaacagaaccca |
783 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
7759887 |
ctgttccatctccaattttcagtgaaactgaaccca |
7759852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 12052462 - 12052579
Alignment:
| Q |
283 |
tcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcatatactgagacaacaaatcggaagatttctcacaagaatgacc |
382 |
Q |
| |
|
||||||||| |||||| |||||||| ||||| ||||||| || |||||| | ||||| | |||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
12052462 |
tcaatttctatgcaaatctccaatcgtcttggcaatttcgaattactttgaagttcatgtgttgagacaagaattcagaagatttctcactagaatgacc |
12052561 |
T |
|
| Q |
383 |
cacagatgaaaccatttc |
400 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
12052562 |
cacaaatgaaaccatttc |
12052579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 28960052 - 28959879
Alignment:
| Q |
9 |
acatcatcaacaagaaaatcattcttacttctagacttaacaaacctttgattctcatacccat---taaccaaatcaaagcaatgcatgcaacctctat |
105 |
Q |
| |
|
||||||||||| | ||||||||| |||||| | ||||| ||||| || |||||||||| ||| ||||||||||||| |||| | ||| ||||| |
|
|
| T |
28960052 |
acatcatcaaccaaaaaatcatttttactttttgacttcacaaatctctgattctcatttccaccactaaccaaatcaaaacaattaacacaatctctac |
28959953 |
T |
|
| Q |
106 |
tcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttttgttactaaca |
179 |
Q |
| |
|
|||||||||| || |||||||| |||||| |||||||| | |||||||||||||||| ||| || |||| |||| |
|
|
| T |
28959952 |
tcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaaaagtgttattaccaaca |
28959879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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