View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6462_high_15 (Length: 239)
Name: NF6462_high_15
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 41697815 - 41698048
Alignment:
| Q |
1 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacattaaaatgaataaataaacaaatatatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41697815 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacattaaaatgaataaataaacaaatatatggc |
41697914 |
T |
|
| Q |
101 |
agagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697915 |
agagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaa |
41698014 |
T |
|
| Q |
201 |
acttccttctccataaccttgttgtctctgttcc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
41698015 |
acttccttctccataaccttgttgtctctgttcc |
41698048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 41703409 - 41703642
Alignment:
| Q |
1 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacattaaaatgaataaataaacaaatatatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41703409 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacattaaaatgaataaataaacaaatatatggc |
41703508 |
T |
|
| Q |
101 |
agagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703509 |
agagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaa |
41703608 |
T |
|
| Q |
201 |
acttccttctccataaccttgttgtctctgttcc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
41703609 |
acttccttctccataaccttgttgtctctgttcc |
41703642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 8017257 - 8017375
Alignment:
| Q |
1 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacattaaaatgaataaataaacaaatatatggc |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |
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| T |
8017257 |
cgaattgcacgagagaatggcggaccccaccatccaatttcctttttatattatttttttgatattaacattaaaatgaataaataaataagtatatgga |
8017356 |
T |
|
| Q |
101 |
agagacaatcacggcacac |
119 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
8017357 |
agagacaatcacggcacac |
8017375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 54079135 - 54078902
Alignment:
| Q |
1 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacattaaaatgaataaataaacaaatatatggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54079135 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgatattaacattaaaatgaataaataaacaaatatatggc |
54079036 |
T |
|
| Q |
101 |
agagacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54079035 |
agagacaatcacgacacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaa |
54078936 |
T |
|
| Q |
201 |
acttccttctccataaccttgttgtctctgttcc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
54078935 |
acttccttctccataaccttgttgtctctgttcc |
54078902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 23556177 - 23556307
Alignment:
| Q |
103 |
agacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaaac |
202 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
23556177 |
agacaatcacggcacaaacttccttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccaccgtttttaaaa |
23556276 |
T |
|
| Q |
203 |
ttccttctccataaccttgttgtctctgttc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
23556277 |
ttccttctccataaccttgttgtctctgttc |
23556307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 9842606 - 9842489
Alignment:
| Q |
2 |
gaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacattaaaatgaataaataaacaaatatatggca |
101 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| | |
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|
| T |
9842606 |
gaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttgataataacattaaaatgaataaataaataaatatatggaa |
9842507 |
T |
|
| Q |
102 |
gagacaatcacggcacac |
119 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
9842506 |
gagacaatcacggcacac |
9842489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 194
Target Start/End: Complemental strand, 9842476 - 9842386
Alignment:
| Q |
104 |
gacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgt |
194 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9842476 |
gacaatcactgcacaaacttccttctccataaccttatgttctgattttgttcaacaacacaaactcacagttaccaacattcaccgccgt |
9842386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 23556046 - 23556165
Alignment:
| Q |
1 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnng-atattaacattaaaatgaataaataaacaaatatatgg |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23556046 |
cgaattgcacgagagaatggctgaccccaccatccaatttcctttttatattatttttttttatattaacattaaaatgaataaataaacaaatatatgg |
23556145 |
T |
|
| Q |
100 |
cagagacaatcacggcacac |
119 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
23556146 |
aagagacaatcatggcacac |
23556165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 42434805 - 42434708
Alignment:
| Q |
104 |
gacaatcacggcacacactttcttctccataaccttatgttctgattttgttcaacaacacaaactcaccgttaccaacattcaccgccgttttcaaa |
201 |
Q |
| |
|
||||||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
42434805 |
gacaatcactgcacaaacttctttctccataacattatgttctaattttgttcaacaacacaaactcaccattaccaacattcaccgccgttttcaaa |
42434708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 42434936 - 42434818
Alignment:
| Q |
1 |
cgaattacacgagagaatggctgaccccaccatccaatttcctttttatattannnnnnngatattaacattaaaatgaataaataaacaaatatatggc |
100 |
Q |
| |
|
|||||| |||||||||||| |||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
42434936 |
cgaattgcacgagagaatgactgaccaaactatccaatttcctttttatattatttttttgatattaacattaaaatgaataaataaataaatatattga |
42434837 |
T |
|
| Q |
101 |
agagacaatcacggcacac |
119 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
42434836 |
agagacaatcacggcacac |
42434818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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