View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6462_high_2 (Length: 648)

Name: NF6462_high_2
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6462_high_2
NF6462_high_2
[»] chr4 (1 HSPs)
chr4 (1-633)||(28240689-28241323)


Alignment Details
Target: chr4 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 1 - 633
Target Start/End: Original strand, 28240689 - 28241323
Alignment:
Q  1 cggaacagcctagcaaagtcgaaagaacgacctcggatagggaaggtaaaattataatgctcttctgtcatatcatatgtaaatagattaggacaccttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28240689 cggaacagcctagcaaagtcgaaagaacgacctcggatagggaaggtaaaattataatgctcttctgtcatatcatatgtaaatagattaggacaccttc 28240788  T
Q  101 atacaatattgccacaatcacc--catcagcaaaagtttacaatagatttatgtcttggtttaatttataatgtacaaaaaagaacttgtgatgcacaat 198  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28240789 atacaatattgccacaatcaccaacatcagcaaaagtttacaatagatttatgtcttggtttaatttgtaatgtacaaaaaagaacttgtgatgcacaat 28240888  T
Q  199 ttatttcccttctaacttgttgttattgtgtacaggccgtgagcatttttatagatatggacgagtctggtgcacgtgcaaacgagtggatctacaagta 298  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28240889 ttatttcccttctaacttcttgtaattgtgtacaggccgtgagcatttttatagatatggacgagtctggtgcacgtgcaaacgagtggatctacaagta 28240988  T
Q  299 gattgcactgatgaactgaaattcatctcaaaggtggtgtctatagtcagcagcaccacccnnnnnnngggaacttcttggggatttattatacgtttat 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  28240989 gattgcactgatgaactgaaattcatctcaaaggtggtgtctatagtcagcagcaccaccctttttttgggaacttcttggggatttattatacgtttat 28241088  T
Q  399 acttggatcgtaacaaaatctacagaatccttctaacatttctattgaaatcacttcaaggcaactgtattttttgttcttcctgacctatttcttctgt 498  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28241089 acttggatcgtaacaaaatctacagaatccttctaacatttctattgaaatcacttcaaggcaactgtattttttgttcttcctgacctatttcttctgt 28241188  T
Q  499 ttgtttacagtagtggtgtaaatttggattaatataagaaaagcatccacattaaatttggattcattgtgttatcctattacttgggaaaattacttga 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28241189 ttgtttacagtagtggtgtaaatttggattaatataagaaaagcatccacattaaatttggattcattgtgttatcctattacttgggaaaattacttga 28241288  T
Q  599 attgtgcaaaaagtttcagtcctttgcaagtataa 633  Q
    || ||||||||||||||||||||||||||||||||    
T  28241289 atcgtgcaaaaagtttcagtcctttgcaagtataa 28241323  T

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