View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6462_high_3 (Length: 528)
Name: NF6462_high_3
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 80 - 513
Target Start/End: Complemental strand, 36152440 - 36152030
Alignment:
| Q |
80 |
caacgtggaaaaggaaatatagacccaaagctataccactaaataaatttgagagtatggaagttccttcacatgtggttcaggtaattaagtccacaat |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36152440 |
caacgtggaaaaggaaatatagacccaaagctataccactaaataaatttgagagtatggaagttccttcacatgtggttcaggtaattaagtccacaat |
36152341 |
T |
|
| Q |
180 |
atactaacatttaggacctag-acctacttccttgtggtacttggcaatgcatatatctggcagtgtccgtaggaaaaagacacctaaaccaactatgta |
278 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36152340 |
atactaacattaa-----taggacctacttccttgtggtacttggcaatgcatatatctggcagtgtccgtaggaaaaagacacctaaaccaactatgta |
36152246 |
T |
|
| Q |
279 |
cgtgatgtacaaatttgattatataaaccattaaaaaatatagtgacttgctagaacctatatctatatta-ttaattgatcaattagtagtgcataata |
377 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36152245 |
cgtgatgtacaaatt-gattatgtaaaccattaaaaaaa-------------------tatatgtatattaattaattgatcaattagtagtgcataata |
36152166 |
T |
|
| Q |
378 |
tgtacaaattatataggtttacgtaaacatcattatacttaattccattatttattttgtattgatcttaacatatgtatcgtctgcacctcaagattct |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36152165 |
tgtacaaattatataggtttacgtaaacatcattatacttaattccattatttattttgtattgatcttaacatatgaatcgtctgcacctcaagattct |
36152066 |
T |
|
| Q |
478 |
aattaaatcttccatactcttacgtctctactatat |
513 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36152065 |
aattaaatcttccatacttttacgtctctactatat |
36152030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 36152479 - 36152437
Alignment:
| Q |
12 |
acagataagaataattccaata---attaatttgaaagacaac |
51 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36152479 |
acagataagaataattccaataattattaatttgaaagacaac |
36152437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University