View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6462_high_5 (Length: 420)
Name: NF6462_high_5
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 412
Target Start/End: Complemental strand, 49018379 - 49017984
Alignment:
| Q |
16 |
ctctctttccaagccaaaactcaagacaaatcctaatttcattctttatccaactaccctcatacacaaatttttcttcttccaacagtgagtgatccct |
115 |
Q |
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| T |
49018379 |
ctctctttccaagccaaaactcaagacaaatcctaatttcattctttatccaactaccctcatacacaaatttttcttcttccaacagtgagtgatccct |
49018280 |
T |
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| Q |
116 |
ctgagattcatatctcaacactagtttgtcattagcacggggtagcatcttaacacatattttggtaacaaatcaccacatcagcaagtgtcaatgctga |
215 |
Q |
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| T |
49018279 |
ctgagattcatatctcaacactagtttgtcattagcacggggcagcagctta-cacatattttggtaacaaatcaccacatcagcaattgtcaatgctga |
49018181 |
T |
|
| Q |
216 |
gattccagaatcaacacacgctgttcgcagatctttacataaattacgtcgaggatttaactcgaaatattcaaacaatcttttagaagggaagtcacga |
315 |
Q |
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| T |
49018180 |
gattccagaatcaacacacgctgttcgtagatctttacataaattacgtcgaggatttaactcgaaatattcaaacaatcttttagaagggaagtcacga |
49018081 |
T |
|
| Q |
316 |
acaactaaattgtcccacaaatacttgtaacacattagttgaatcctcccatttctttcttgtgattctgcaggaactgtatctcagtaacgagtct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49018080 |
acaactaaattgtcccacaaatacttgtaacacattagttgaatcctcccatttcttttttgtgattctgcaggaactgtatctcagtaacgagtct |
49017984 |
T |
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