View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6462_high_8 (Length: 330)
Name: NF6462_high_8
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 19788337 - 19788025
Alignment:
| Q |
4 |
aaaaaatggtcccttgcatcaaaatagtcccggtgataaaaatggttggcaataatttga----aagtgtgtatatcaatgtcgatgcttctctaagttt |
99 |
Q |
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| T |
19788337 |
aaaaaatggtcccttacatcaaaatggtcctggtgaaaaaaatggttggcaataatttgatttaaagtgtgtataaaaatgtcgatgtttctctaagctt |
19788238 |
T |
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| Q |
100 |
tgggtgtatcagcgttgaaatatttctcaaggtacttcccatagtcgctgagtgctacattttggtccttttgtgtactttccatttgcccaactggagc |
199 |
Q |
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| T |
19788237 |
tcggtgtatcagcgttaaaatatttctcaaggta-ttcccatagtcgctgagttctacatttaggtccttttgtgtactttccatttgccaaactggagc |
19788139 |
T |
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| Q |
200 |
aattttaagtaaactagccttcagttcagctcaagcaggacagatatataatcaagcacataatcagtgtcaaaacac-actcaatttcctgtctgatca |
298 |
Q |
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| T |
19788138 |
aattttaagtaaactagccttcagttcagctcaatcaggacagaattataatcaagcacataatcagtgtcaaaacacaactcaatttcctgtctgattg |
19788039 |
T |
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| Q |
299 |
gatcaatcatctct |
312 |
Q |
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| T |
19788038 |
gatcaatcatctct |
19788025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 28172665 - 28172479
Alignment:
| Q |
38 |
gataaaaatggttggcaataatttga----aagtgtgtatatcaatgtcgatgcttctctaagttttgggtgtatcagcgttgaaatatttctcaaggta |
133 |
Q |
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| T |
28172665 |
gataaaaatggttggcaattatttgatttaaagtgtgtatatcaaagttggtgtttctgtaagcttttgatatatcaggg---aaacttttctcaagatg |
28172569 |
T |
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| Q |
134 |
cttcccatagtcgctgagtgctacattttggtccttttgtgtactttccatttgcccaactggagcaattttaagtaaactagccttcag |
223 |
Q |
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| T |
28172568 |
cttcccatacttgctgagtgctacatttagctccttctgtgtactttccatttggccaattggggaaattttaagtaaactggccttcag |
28172479 |
T |
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