View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6462_low_10 (Length: 303)
Name: NF6462_low_10
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 34007651 - 34007385
Alignment:
| Q |
19 |
aacattccctcactctcaagttcagcaacaccaccttcatcaatggcggacgctgaagaaaacacgcttcgaatcctaatagcaaccgattgtcacttag |
118 |
Q |
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| T |
34007651 |
aacattccctcactctcaagctcagcaacaccaccttcatcaatggcggacgctgaagaaaacacgcttcgaatcctaatagcaaccgattgtcacctag |
34007552 |
T |
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| Q |
119 |
gttacatggagaaagacgaagttcgacgccacgattccttccaagcattcgaagaaatttgctcaatagcggaaaagaaacacgtcgatttcatgctact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |
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| T |
34007551 |
gttacatggagaaagacgaagttcgacgccacgattccttccaagcattcgaagaaatttgctcaattgcggaaaagaagcatgtcgatttcatgctact |
34007452 |
T |
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| Q |
219 |
cggtggtgaccttttccatgaaaataaaccttctaggtcaactttagtcaaagctattgagattcta |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007451 |
gggtggtgaccttttccatgaaaataaaccttctaggtcaactttagtcaaagctattgagattcta |
34007385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 1178513 - 1178649
Alignment:
| Q |
59 |
caatggcggacgctgaagaaaacacgcttcgaatcctaatagcaaccgattgtcacttaggttacatggagaaagacgaagttcgacgccacgattcctt |
158 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
1178513 |
caatggcggatgctgaagaaaacacgcttcgaattctaatagcaactgattgtcacttaggttacatggagaaagacgaagttcggcgccatgattcctt |
1178612 |
T |
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| Q |
159 |
ccaagcattcgaagaaatttgctcaatagcggaaaag |
195 |
Q |
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| T |
1178613 |
ccaagcattcgaagaaatttgctcaatagcggaaaag |
1178649 |
T |
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