View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6462_low_12 (Length: 269)
Name: NF6462_low_12
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 269
Target Start/End: Complemental strand, 6083682 - 6083419
Alignment:
| Q |
6 |
agaagcaaaggactccccacagctaacattgtcatcactgccaatgtaagacattgatgccaaagataactcttgcaatgcaacatgacttctaggctgc |
105 |
Q |
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| T |
6083682 |
agaagccaaggactccccgcagctaacattgtcatcactgccaatgtaagacattgatgccaaagataactcttgcaatgcaacatgacttctaggctgc |
6083583 |
T |
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| Q |
106 |
tccgatgctacttggtttttggaatcaatctcagattcaagttgcaacagttttgacgctgtttgcgaaagcattactcttgaaaattggacttcatttc |
205 |
Q |
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| T |
6083582 |
tccgatgctacttggtttttggaatcaatctcagactcaagttgcaacagttttgacgctgtttgcgaaagcattactcttgaaaattggacttcatttc |
6083483 |
T |
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| Q |
206 |
gaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaac |
269 |
Q |
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| T |
6083482 |
gaatatcaagttccttttgaagcactcgagcctcatacatcagagaagtattatccttctcaac |
6083419 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 39107390 - 39107438
Alignment:
| Q |
23 |
cacagctaacattgtcatcactgccaatgtaagacattgatgccaaaga |
71 |
Q |
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| T |
39107390 |
cacagctaaccttgtcatcactgccaatatcagacgttgatgccaaaga |
39107438 |
T |
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