View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6462_low_15 (Length: 239)
Name: NF6462_low_15
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_low_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 6083064 - 6083285
Alignment:
| Q |
18 |
gtcaatgaaggaacatctcgaggaatctatacaccaggaactaatttacgaagaaagagttgcgcatttggatcgtactctcaatgaatgtatgcggcag |
117 |
Q |
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| T |
6083064 |
gtcaatgaaggaacatctcgaggaatctatacaccaggaactaatttacgaagaaagagttgcgcatttggatcgtactctcaaggaatgtatgcggcag |
6083163 |
T |
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| Q |
118 |
ttgcattttgttagagaggaacaagagcaaaggatttatgatgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagc |
217 |
Q |
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| T |
6083164 |
ttgcattttgttagagaggaacaagagcaaaggatttatgatgctgtaatgaaggtttctgtagaattcgatcaagctcgcgttgttttagaggagcagc |
6083263 |
T |
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| Q |
218 |
tatcagagaaaagtaaaaggct |
239 |
Q |
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| T |
6083264 |
tatcagagaaaagtaaaaggct |
6083285 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 39108298 - 39108188
Alignment:
| Q |
62 |
tttacgaagaaagagttgcgcatttggatcgtactctcaatgaatgtatgcggcagttgcattttgttagagaggaacaagagcaaaggatttatgatgc |
161 |
Q |
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| T |
39108298 |
tttatgaagaaagagtagcccatttggatggagctctgaaggaatgtatgcagcagttacgatttgttcgagaagaacaagggcaaaggattcatgatgc |
39108199 |
T |
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| Q |
162 |
tgtaatgaagg |
172 |
Q |
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| T |
39108198 |
tgtgatgaagg |
39108188 |
T |
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