View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6462_low_9 (Length: 316)
Name: NF6462_low_9
Description: NF6462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6462_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 19789026 - 19788906
Alignment:
| Q |
11 |
caaagggacaatatgggaacttaaacgcttctgtgctgttcatggacattttcaagatagactgatcacagaggacatggccacgggacatcaacattgg |
110 |
Q |
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| T |
19789026 |
caaagggacaatatgggaacttaaacgcttctgtgctgttcatggacattttcaagatagactgatcacagaggacatggccacaggacaacaacattgg |
19788927 |
T |
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| Q |
111 |
atggttatcctcagttgcttg |
131 |
Q |
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| T |
19788926 |
atggttatcctcagttgcttg |
19788906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 130 - 255
Target Start/End: Complemental strand, 19788870 - 19788745
Alignment:
| Q |
130 |
tggaattctttgtcagtctcaattaccactgttaaaaggttcatgactgccatttctgctttcctgacatgatattcataaatttaaggagagctggcaa |
229 |
Q |
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|||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19788870 |
tggaattctttgtcagtctcaattgctactgttaaaaggctcatgactgccatttctgctttcctgacatgatattcataaatttaaggagagctggcaa |
19788771 |
T |
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| Q |
230 |
aaacaggatccctgtggccacagtca |
255 |
Q |
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| T |
19788770 |
aaacaggacccctgctgccacagtca |
19788745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 19788465 - 19788412
Alignment:
| Q |
263 |
agcaagtgtcagaattagtggcagcccaatcaagggctgggtcctccaggttct |
316 |
Q |
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| T |
19788465 |
agcaagtgtcagaattagcggcagcctaattgagggctgggtcctccaggttct |
19788412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 28173412 - 28173292
Alignment:
| Q |
11 |
caaagggacaatatgggaacttaaacgcttctgtgctgttcatggacattttcaagatagactgatcacagaggacatggccacgggacatcaacattgg |
110 |
Q |
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||||||||||||| ||| ||||||| ||| |||||| ||| |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |
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| T |
28173412 |
caaagggacaatacgggcacttaaatacttttgtgctattcttggacattttcaagatagactgcttacagaggacatggccacaggacatcaacattgg |
28173313 |
T |
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| Q |
111 |
atggttatcctcagttgcttg |
131 |
Q |
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| |||| |||||||||||||| |
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| T |
28173312 |
agggttctcctcagttgcttg |
28173292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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