View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_high_17 (Length: 270)
Name: NF6464_high_17
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 384789 - 385031
Alignment:
| Q |
12 |
gaagaagaagattaataggatgacgacaaagaggacatttgcaaggctgaagaggagaataatattgccaaacttggataatacagtttgcacaaaacca |
111 |
Q |
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| T |
384789 |
gaagaagaagattaataggacgacgacaaagaggacatttgcaaggttgaagaggagaagaatattgccaaacttggataatacagtttgcacaaaacca |
384888 |
T |
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| Q |
112 |
gtgagaacaatttgcttgacatgggagttggaagttttcgtgacagattgaacatccatcgttcgttgctggaccttcgccgctgctgtgatgctctaca |
211 |
Q |
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| T |
384889 |
gtgagaacaatttgcttgacatgggagttggaagttttcgtgacagattgaacatcgatcgttcgttgctggaccttcgccgctgctgtgatgctctaca |
384988 |
T |
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| Q |
212 |
tccatctctctccctccctatgagcaattggaaggaaatatat |
254 |
Q |
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| T |
384989 |
tccatctctctccctccctatgagcaattggaaggaaatatat |
385031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 390173 - 390352
Alignment:
| Q |
16 |
aagaagattaataggatgacgacaaagaggacatttgcaaggctgaagaggagaataatattgccaaacttggataatacagtttgcacaaaaccagtga |
115 |
Q |
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|||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||| |||| |||||||||||||| || ||||| || |||||||||||| |
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| T |
390173 |
aagaaggttaataggacgacgacagagaggacatttgcaaggttgaagaggagaagaatactgccaaacttggattatgcagttagcgcaaaaccagtga |
390272 |
T |
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| Q |
116 |
gaacaatttgcttgacatgggagttggaagttttcgtgacagattgaacatccatcgttcgttgctggaccttcgccgct |
195 |
Q |
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| T |
390273 |
gaacaatttgcttgacatgggagttggaagtttccgtgacagattgaacatagatcgtttgttggtggaccttctccgct |
390352 |
T |
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