View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_high_21 (Length: 246)
Name: NF6464_high_21
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4065003 - 4064764
Alignment:
| Q |
1 |
tcatacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtattgtattttg |
100 |
Q |
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| T |
4065003 |
tcatacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtattgtattttg |
4064904 |
T |
|
| Q |
101 |
tattcttgctaaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgttagtcccaatatcttgggg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4064903 |
tattcttgataaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgttagtcccaatatcttgggg |
4064804 |
T |
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| Q |
201 |
tacaagtaattatattgtgtataccaataagcgaccctat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4064803 |
tacaagtaattatattgtgtataccaataagcgaccctat |
4064764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 4058657 - 4058477
Alignment:
| Q |
1 |
tcatacacagaagttttactcgtacccgtggcaactcctgatttcagtatgcctaacatggtcattacaattacttgcatagtttttgtattgtattttg |
100 |
Q |
| |
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||||||||||||||||| ||||||||| | |||||||||||||||| |||||| ||| ||||| ||||||||||||| |||||||| ||||||||||| |
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| T |
4058657 |
tcatacacagaagttttgctcgtacccctaacaactcctgatttcagcatgccttacaacgtcatcacaattacttgcacagtttttgcattgtattttg |
4058558 |
T |
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| Q |
101 |
tattcttgctaaaggtacttcaaggacgggttggagatgaggaaatacttttgaaaaacaaaggtaactcttgactcttgt |
181 |
Q |
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| T |
4058557 |
gatccttgctaaatgtactccgaagacgagttggagaggaggaaagacttttgaaaaacaaaggtaactcttgactcttgt |
4058477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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