View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_high_24 (Length: 239)
Name: NF6464_high_24
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 2944238 - 2944442
Alignment:
| Q |
19 |
aagcgtggtctttgcataaaaattgctgaagattaggaaaaaacactgaagagaatgaacaatggcacaacagttgaaccagataatgtaactatcgagg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2944238 |
aagcgtggtctttgcataaaaattgctgaagattaggaaaaaacactgaagagaatgaacaatggcacaacagttgaaccagatagtgtaactatcgagg |
2944337 |
T |
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| Q |
119 |
cattaaacggtctaatagaggaaggcataagatagctcctaaaattgtttaacaagaatgtgagctctaagaaagtgaatgagaagcaccttaatcccaa |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
2944338 |
cattaaacgatctaatagaggaaggcataagatagctcctaaaattgtttaacaagaatgtgagctctaagaaagtgaatgagaagcactttaatcccta |
2944437 |
T |
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| Q |
219 |
catat |
223 |
Q |
| |
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||||| |
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| T |
2944438 |
catat |
2944442 |
T |
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