View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_high_29 (Length: 207)
Name: NF6464_high_29
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 45239050 - 45238877
Alignment:
| Q |
16 |
gatgaagacaacatttgttttgcatttaacagagtgagtataaagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaagnnnnnnntca |
115 |
Q |
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| T |
45239050 |
gatgaagacaacatttgttttgcatttaacagagtgagtataaagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaa-aaaaaaatca |
45238952 |
T |
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| Q |
116 |
tcaaattcacaaacaatacccagcattaagaaagttacacccaattaaccttctacaaagcactaattcattttg |
190 |
Q |
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| T |
45238951 |
tcaaattcacaaacaatacccagcattaagaaagttacacccaattaaccttctacaaagcactaattcattttg |
45238877 |
T |
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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 7832071 - 7831908
Alignment:
| Q |
19 |
gaagacaacatttgttttgcatttaacagagtgagtataaagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaagnnnnnnntcatca |
118 |
Q |
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|||||| ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
7832071 |
gaagaccacatttgttatgcatttaacagagc----atagagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaa----caaattatca |
7831980 |
T |
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| Q |
119 |
aattcacaaacaatacccagcattaagaaagttacacccaattaaccttctacaaagcactaattcattttg |
190 |
Q |
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||||||||||| ||||||||||| | |||||| |||| |||||||||||||||| |||| ||||||||||| |
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| T |
7831979 |
aattcacaaacgatacccagcatgacgaaagtaacactcaattaaccttctacagtgcaccaattcattttg |
7831908 |
T |
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