View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_low_10 (Length: 357)
Name: NF6464_low_10
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 6058621 - 6058281
Alignment:
| Q |
14 |
cacagacacccatatgtcaacattgattataatttgagaaaacaaatttattgaatgcaatcacatgtgtcagacaccgcacatatcttcgagtcttcta |
113 |
Q |
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| T |
6058621 |
cacagacacccatatgtcaacattgattataatttgagaaaacaaatttattgaatgcaatcacatgtgtcagacaccacacatatcttcgagtcttcga |
6058522 |
T |
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| Q |
114 |
tcaaaagtgtcggtgcttcaaaacataaattataaaaatgaaaactttaactaatgatttttccttaaattaaattcagaatttcagcaagaaaccaaca |
213 |
Q |
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| T |
6058521 |
tcaaaagtgtc--tgcttcaaaacataaattataaaaatgaaaactttaactaatgatttttccttaaattaaattcagaatttcagcaagaaaccaaca |
6058424 |
T |
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| Q |
214 |
tgtcatataaatcataaattaatcaaaatcaacaataaattcctnnnnnnnnntagaatttgaacctgaatgatatcatgcaaagaaatgatattaggat |
313 |
Q |
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| T |
6058423 |
tgtcatataaatcataaattaatcaaaatcaacattaaattcct-aaaaaaaatagaatttgaacctgaatgatatcatgcaaagaaatgatattaggat |
6058325 |
T |
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| Q |
314 |
gattaattctcttaagaataaaaatctcagacataagactctct |
357 |
Q |
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| T |
6058324 |
gattaattctcttaagaataaaaatctcagacataagactctct |
6058281 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 6294597 - 6294544
Alignment:
| Q |
30 |
tcaacattgattataatttgagaaaacaaatttattgaatgcaatcacatgtgt |
83 |
Q |
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| T |
6294597 |
tcaacactgataataatttgagaaaatgaattaattgaatgcaatcgcatgtgt |
6294544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 18268069 - 18268012
Alignment:
| Q |
27 |
atgtcaacattgattataatttgagaaaacaaatttattgaatgcaatcacatgtgtc |
84 |
Q |
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| T |
18268069 |
atgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtc |
18268012 |
T |
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