View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_low_13 (Length: 336)
Name: NF6464_low_13
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 44566512 - 44566201
Alignment:
| Q |
19 |
actgccaaacccaaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaag |
118 |
Q |
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| T |
44566512 |
actgccaaacccaaaggcacctgtaaattaggtaaagaaaataatatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctgaag |
44566413 |
T |
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| Q |
119 |
agcaactcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagcaat |
218 |
Q |
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| T |
44566412 |
agcaactcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgcaaaaagcaat |
44566313 |
T |
|
| Q |
219 |
atataataaaatatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566312 |
atataataaaatatatcagcacactgcaacgattaataccatagacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaa |
44566213 |
T |
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| Q |
319 |
tatctgtgctgc |
330 |
Q |
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||||||| |||| |
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| T |
44566212 |
tatctgtactgc |
44566201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 36032672 - 36032874
Alignment:
| Q |
21 |
tgccaaacccaaaggcacctgtaaattaggtaaagaaaata----atatcacttaacaaaaatcattttttacaccacagaaatttattttctcttctga |
116 |
Q |
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| T |
36032672 |
tgccaaacccaaaggaacctgcaaattaggtaaaaaaaatatataacatcacttaacagaaatcatttgttacacagcagaaatttattttcactgctat |
36032771 |
T |
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| Q |
117 |
agagcaactcagaagaataatgtggcattagacttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactgccaaaagca |
216 |
Q |
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| T |
36032772 |
agagtaactcggaaggatattatggcattgcacttactgcatatattagaaatatgcggtgtccaagaacagatatcttacgaagatactgcagaaagca |
36032871 |
T |
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| Q |
217 |
ata |
219 |
Q |
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||| |
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| T |
36032872 |
ata |
36032874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 36032901 - 36032968
Alignment:
| Q |
249 |
gattaataccatagacaaagtaggaatctgaattcaacaaacttacaagacaaaaaacaataaacactaatat |
321 |
Q |
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| T |
36032901 |
gatcaataccatagacaaagtgggagtctgaattc-----acttacaagggaaaaaacaataaccactaatat |
36032968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 20122217 - 20122158
Alignment:
| Q |
148 |
acttactgcatatatctgaaatatgtgatgtccaaaaacagatatcttacgaagatactg |
207 |
Q |
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||||||||| || || |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
20122217 |
acttactgcgtagattagaaatatgcgatgtccaagaacagatatcttacgaagatactg |
20122158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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