View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_low_16 (Length: 272)
Name: NF6464_low_16
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 54302648 - 54302901
Alignment:
| Q |
1 |
tttccaattttcaaattgatttgagttcagaaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacc |
100 |
Q |
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| T |
54302648 |
tttccaattttcaaattgatttgagttaagaaatgtcttcatcatttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacc |
54302747 |
T |
|
| Q |
101 |
tcttaaagccaaatgatctgcaacaaattctctaatctgcagacaatttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttg |
200 |
Q |
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| T |
54302748 |
tcttaaagccaaatgatccgcaacaaattctctaatctgcagacaatttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctg |
54302847 |
T |
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| Q |
201 |
aaaaaagtaaagggtgatttcagaatnnnnnnngataaacctgtatatatggag |
254 |
Q |
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| T |
54302848 |
aaaaaagtaaagggtgatttcagaataaaaaaagataaacctgtatatatggag |
54302901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
92 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
145 |
Q |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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