View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_low_20 (Length: 249)
Name: NF6464_low_20
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 39540242 - 39540029
Alignment:
| Q |
13 |
agcataggccagagaaattggaggaacttgggaatatgctaactggtcttgatgctggagattctattgttatagctaaatcattttcccacatgcttaa |
112 |
Q |
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| T |
39540242 |
agcataggccagagaaattggaggaacttgggaatatgctaactggtcttgatgctggagattctattgttatagctaaatcattttcccacatgcttaa |
39540143 |
T |
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| Q |
113 |
tttggcaaacttggctgaagaagttcaaattgcatatagaagaaggatcaagttactgaagaaaggtgattttgctgatgaaaattctgccataactgag |
212 |
Q |
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| T |
39540142 |
tttggcaaacttggctgaagaagttcaaattgcatatagaagaaggatcaagttactgaagaaaggtgattttgctgatgaaaattctgccataactgag |
39540043 |
T |
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| Q |
213 |
tcagatattgaaga |
226 |
Q |
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|||||||||||||| |
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| T |
39540042 |
tcagatattgaaga |
39540029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 25 - 226
Target Start/End: Complemental strand, 30910667 - 30910466
Alignment:
| Q |
25 |
agaaattggaggaacttgggaatatgctaactggtcttgatgctggagattctattgttatagctaaatcattttcccacatgcttaatttggcaaactt |
124 |
Q |
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| T |
30910667 |
agaagttggaggaactcgggaacatgctgaccggtcttgatgctggggattctattgtcattgccaagtctttttctcacatgcttaacttggccaattt |
30910568 |
T |
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| Q |
125 |
ggctgaagaagttcaaattgcatatagaagaaggatcaagttactgaagaaaggtgattttgctgatgaaaattctgccataactgagtcagatattgaa |
224 |
Q |
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| T |
30910567 |
ggcagaagaagttcaaattgcctaccgcagaaggattaagttattaaagaagggggattttggtgatgagaactctgccatcactgagtcagacattgaa |
30910468 |
T |
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| Q |
225 |
ga |
226 |
Q |
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|| |
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| T |
30910467 |
ga |
30910466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 22564942 - 22565024
Alignment:
| Q |
63 |
gatgctggagattctattgttatagctaaatcattttcccacatgcttaatttggcaaacttggctgaagaagttcaaattgc |
145 |
Q |
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| T |
22564942 |
gatgctggagattctattgttgttgccaaatccttttctcatatgcttaacttggctaacttagctgaggaggtccaaattgc |
22565024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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