View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6464_low_3 (Length: 508)

Name: NF6464_low_3
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6464_low_3
NF6464_low_3
[»] chr7 (8 HSPs)
chr7 (255-492)||(3372601-3372838)
chr7 (255-492)||(3361850-3362087)
chr7 (304-482)||(3299506-3299684)
chr7 (296-410)||(3350546-3350660)
chr7 (81-139)||(3372991-3373049)
chr7 (262-421)||(3390830-3390989)
chr7 (300-410)||(3405187-3405297)
chr7 (292-350)||(3347188-3347246)
[»] chr3 (1 HSPs)
chr3 (13-93)||(32368391-32368471)
[»] chr4 (1 HSPs)
chr4 (24-93)||(26076448-26076517)
[»] chr1 (2 HSPs)
chr1 (24-93)||(4958422-4958491)
chr1 (379-416)||(43364367-43364404)
[»] chr6 (1 HSPs)
chr6 (354-488)||(20721147-20721275)
[»] chr2 (2 HSPs)
chr2 (24-93)||(12370878-12370945)
chr2 (321-415)||(23992873-23992967)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 255 - 492
Target Start/End: Complemental strand, 3372838 - 3372601
Alignment:
Q  255 catgtcttataccaatgagaaaaataatcatgtgttggaatctcacaccccacaaatagatgacaatgatacactctcagctatggtacttggtgcaaat 354  Q
    |||||| ||||||||||||||| | ||||||||| | |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3372838 catgtcctataccaatgagaaagagaatcatgtggttgaatgtcacaccccacaaatagatgacaatgatacactctctgctatggtacttggtgcaaat 3372739  T
Q  355 atggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagctaatgaaagtaatggtggattcatgtcatcctttgaaattg 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3372738 atggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagctaatgaaagtaatggtggattcatgtcatcctttgaaattg 3372639  T
Q  455 cttcaaagctaccaacacaacattctgatttaccgaat 492  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3372638 cttcaaagctaccaacacaacattctgatttaccgaat 3372601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 255 - 492
Target Start/End: Complemental strand, 3362087 - 3361850
Alignment:
Q  255 catgtcttataccaatgagaaaaataatcatgtgttggaatctcacaccccacaaatagatgacaatgatacactctcagctatggtacttggtgcaaat 354  Q
    |||||| ||||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3362087 catgtcctataccaatgagaaagagaatcatgtggttgaatctcacaccccacaaatagatgacaatgatacactctctgctatggtacttggtgcaaat 3361988  T
Q  355 atggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagctaatgaaagtaatggtggattcatgtcatcctttgaaattg 454  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  3361987 atggtgtttcctgcagttcttaacgctgcaattgaactccatttatttgatatcattgctaaggaaagtaatggtggattcatgtcatcctttgaaattg 3361888  T
Q  455 cttcaaagctaccaacacaacattctgatttaccgaat 492  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3361887 cttcaaagctaccaacacagcattctgatttaccgaat 3361850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 304 - 482
Target Start/End: Complemental strand, 3299684 - 3299506
Alignment:
Q  304 ccacaaatagatgacaatgatacactctcagctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttg 403  Q
    |||||||||||||| | |||||| |||| ||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||    
T  3299684 ccacaaatagatgatagtgataccctcttagccatggtgctaggtgccaatatggtgtttcctgcagttcttaacgccgcaattgaactcaacttgtttg 3299585  T
Q  404 acatcatagctaatgaaagtaatggtggattcatgtcatcctttgaaattgcttcaaagctaccaacacaacattctga 482  Q
    | ||||| ||||| |||||||||||||  ||||||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  3299584 aaatcattgctaaggaaagtaatggtgatttcatgtcagcctttgaaattgcttcaaagttaccaactcaacactctga 3299506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 296 - 410
Target Start/End: Complemental strand, 3350660 - 3350546
Alignment:
Q  296 ctcacaccccacaaatagatgacaatgatacactctcagctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactcaa 395  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||| |||||||||| ||||||||||| ||||||||| |||||||    
T  3350660 ctcacaccccacaaatagatgacaatgagacactctcagccatggtactaggttccaatttggtgtttccagcagttcttaatgctgcaattcaactcaa 3350561  T
Q  396 tttatttgacatcat 410  Q
     || ||||| |||||    
T  3350560 cttgtttgaaatcat 3350546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 3373049 - 3372991
Alignment:
Q  81 tcagagtatccctaagaaaaagatacgggtcagagtaaaaccccgccaactgaaacagt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3373049 tcagagtatccctaagaaaaagatacgggtcagagtaaaaccccgccaactgaaacagt 3372991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 421
Target Start/End: Complemental strand, 3390989 - 3390830
Alignment:
Q  262 tataccaatgagaaaaataatcatgtgttggaatctcacaccccacaaatagatgacaatgatacactctcagctatggtacttggtgcaaatatggtgt 361  Q
    ||||||||||| ||| | || |||||  ||||| ||| |||||||||||||||||| | || ||| |||| ||| ||| |  | ||| | ||||||||||    
T  3390989 tataccaatgataaagagaaccatgtagtggaaactctcaccccacaaatagatgatagtggtaccctcttagccatgattataggttccaatatggtgt 3390890  T
Q  362 ttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagctaatgaaa 421  Q
    ||||||||||| |||| ||||||||||||||||| || ||||| ||||| ||||| ||||    
T  3390889 ttcctgcagtttttaaagctgcaattgaactcaacttgtttgatatcattgctaaggaaa 3390830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 300 - 410
Target Start/End: Complemental strand, 3405297 - 3405187
Alignment:
Q  300 caccccacaaatagatgacaatgatacactctcagctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactcaattta 399  Q
    ||||| |||||||||||| | |||||| |||| ||| ||| | || ||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||     
T  3405297 caccctacaaatagatgatagtgataccctcttagccatgattctaggtgccaatatggtgtttcctgcagtttttaaagctgcaattgaactcaacttg 3405198  T
Q  400 tttgacatcat 410  Q
    ||||| |||||    
T  3405197 tttgatatcat 3405187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 3347246 - 3347188
Alignment:
Q  292 gaatctcacaccccacaaatagatgacaatgatacactctcagctatggtacttggtgc 350  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||| || |||||    
T  3347246 gaatctcacaccccacaaatagatgatagtgatacactctcagctatggtgctaggtgc 3347188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 32368391 - 32368471
Alignment:
Q  13 catcatttaatttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccct 93  Q
    ||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  32368391 catcattgaatttgaataggcagccagaagtacttctcctatccattctatctccacaccggtctgaatcagagtatccct 32368471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 26076517 - 26076448
Alignment:
Q  24 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccct 93  Q
    |||||||||||||||||||||||  ||||||||||| ||||| |||| ||||||||||||||||||||||    
T  26076517 ttgaataggtagccataagtgctcttcctatccattatatcttcacaccagtctgaatcagagtatccct 26076448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 4958422 - 4958491
Alignment:
Q  24 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccct 93  Q
    ||||||||||||| | | |||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  4958422 ttgaataggtagctaaaggtgctttttctatccattctatctccacaccagtctgaatcagagtatccct 4958491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 43364367 - 43364404
Alignment:
Q  379 gctgcaattgaactcaatttatttgacatcatagctaa 416  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  43364367 gctgctattgaactcaatttatttgagatcatagctaa 43364404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 354 - 488
Target Start/End: Complemental strand, 20721275 - 20721147
Alignment:
Q  354 tatggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagctaatgaaagtaatggtggattcatgtcatcctttgaaatt 453  Q
    |||||| ||||||||| ||||||| ||||||||||| ||||| |||||||| ||||| |||      |||||||||||||| |||||  |||  ||||||    
T  20721275 tatggtttttcctgcaattcttaatgctgcaattgagctcaaattatttgatatcattgct------agtaatggtggatttatgtcggcctacgaaatt 20721182  T
Q  454 gcttcaaagctaccaacacaacattctgatttacc 488  Q
    |||| |||| ||||||| ||||| || ||||||||    
T  20721181 gctttaaagttaccaactcaacactccgatttacc 20721147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 12370945 - 12370878
Alignment:
Q  24 ttgaataggtagccataagtgcttctcctatccattctatctccacatcagtctgaatcagagtatccct 93  Q
    ||||||||||||| | | |||||| ||||  |||||||||||||||| ||||||||||||||||||||||    
T  12370945 ttgaataggtagctagaggtgcttttcct--ccattctatctccacaccagtctgaatcagagtatccct 12370878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 321 - 415
Target Start/End: Original strand, 23992873 - 23992967
Alignment:
Q  321 tgatacactctcagctatggtacttggtgcaaatatggtgtttcctgcagttcttaacgctgcaattgaactcaatttatttgacatcatagcta 415  Q
    |||||||||||| ||||||||  | ||| |   ||||||  |||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||    
T  23992873 tgatacactctctgctatggtgttaggttctgttatggttcttcctgcagttcttaatgctgcaattgaactcaaattatttgatatcattgcta 23992967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University