View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6464_low_6 (Length: 378)
Name: NF6464_low_6
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_6 |
 | |
|
| [»] scaffold0085 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0085 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 52735 - 52387
Alignment:
| Q |
20 |
ccattgaaaaacagcaaatcgcgaagttcaacataaaatataaaatatgtcagtgtatactcgaatttgttgtttgtaagaactttctagggttactagt |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52735 |
ccattaaaaaacagcaaatcgcgaagttcaacataaaatataaaatatgtcagtgtatactcgaatttgttgtttggaagaactttctagggttactagt |
52636 |
T |
|
| Q |
120 |
tgatgaaggaaaagatagtagattataatatagtaaaagaattgaattttgatatttgacacgactagaaagaaagaagnnnnnnntctcattccagtta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |
|
|
| T |
52635 |
tgatgaaggaaaagatagtagattataatacagtaaaagaattgaattttgatatttgacacgactagaaagaaagaagaaaaaaatttcattccaatta |
52536 |
T |
|
| Q |
220 |
atttgataagctggacatccggatcaaaaacttttgctatatgcaagtcactgttgcaaaccaatgatatgatccaaaatggtcaattaccgaaagagcc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52535 |
atttgataagctggacatccggatcaaaaacttttgctatatgcaagtcactgttgcaaaccaatgatatgatccaaaatggtcaattaccgaaagagcc |
52436 |
T |
|
| Q |
320 |
tcgggactgttttcttaaatgcttttccttcaagctttagtcgcctatg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52435 |
tcgggactgttttcttaaatgcttttccttcaagctttagtcgcctatg |
52387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University