View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_low_7 (Length: 377)
Name: NF6464_low_7
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 19576725 - 19576929
Alignment:
| Q |
14 |
catcactatacctctcatcactcaacctctcgtgcacaaattgatcggtcaacgccacacacgctaaccaaagcaattcatcggtattcctcctcagaaa |
113 |
Q |
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| T |
19576725 |
catcactatacctctcatcactcaacctctcgtgcacaaattgatcggtcaacgccacacacgctaaccaaagcaattcatcggtattcctcctcagaaa |
19576824 |
T |
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| Q |
114 |
atgagctagctcatacatcaaacaccctgaaggcttcccatgaaacgtccccaatccataatactctttcttcttcttcctatacattttcaccggatct |
213 |
Q |
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| T |
19576825 |
atgagctagctcatacatcaaacaccctgaaggcttcccatgaaacgtccccaatccataatactctttcttcttcttcctatacattttcaccggatct |
19576924 |
T |
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| Q |
214 |
tgacg |
218 |
Q |
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||||| |
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| T |
19576925 |
tgacg |
19576929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 19576996 - 19577076
Alignment:
| Q |
279 |
accggattcagatgaatctgaatccgaatcagattcggagtcagagtcatcagactcagactcggaatcaatagtagttga |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
19576996 |
accggattcagatgaatctgaatccgaatcagattcggagtcagagtcatcagactcagactccgaatcaatagtggttga |
19577076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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