View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6464_low_8 (Length: 367)
Name: NF6464_low_8
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 44089576 - 44089231
Alignment:
| Q |
1 |
tttaagcaatccatcctcctcctagtttctttactttgctttttatatcatataagaatgggaagcaaccttctgaaagtgagaagctgcgatcaacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44089576 |
tttaagcaatccatcctcctcctagtttctttactttgctttttatatcatataagaatgggaagcaaccttctgaaagtgagaagctgcgatcaacata |
44089477 |
T |
|
| Q |
101 |
cctactaaaaacaagaataaaataaaaaatcattagtgtatattttgtatatagctggaaaacaatttcattcagattatgttcatttccaagttatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44089476 |
cctactaaaaacaagaataaaatacaaaatcattagtgtatattttgtatatagctggaaaacaatttcatttagattatgttcatttccaagttatttg |
44089377 |
T |
|
| Q |
201 |
atgtttttcttaagttgaacaactccaat-nnnnnnnnnttatgccaccgacgcttcacattgaatgtttgtccattgtgcaacaccgacatataatatt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
44089376 |
atgtttttcttaagttgaacaactccaataaaaaaaaaattatgccaccgacgcttcacattgaatgtttgtccattgtgtaacaccggcatatgatatt |
44089277 |
T |
|
| Q |
300 |
acattaaattatttaattgttttaaattattatcagtgtcaacgtg |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44089276 |
acattaaattatttaattgttttaaattattatcaatgtcaacgtg |
44089231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 982870 - 982822
Alignment:
| Q |
297 |
attacattaaattatttaattgttttaaattattatcagtgtcaacgtg |
345 |
Q |
| |
|
|||||||||||||| |||||| ||| || |||||||||||||||||||| |
|
|
| T |
982870 |
attacattaaattagttaattttttgaatttattatcagtgtcaacgtg |
982822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 15969395 - 15969347
Alignment:
| Q |
297 |
attacattaaattatttaattgttttaaattattatcagtgtcaacgtg |
345 |
Q |
| |
|
||||||||||||||| | ||| ||| ||||||||||||||||| ||||| |
|
|
| T |
15969395 |
attacattaaattatgttattttttaaaattattatcagtgtcgacgtg |
15969347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 43328508 - 43328455
Alignment:
| Q |
298 |
ttacattaaattatttaattgttttaaattattatcagtgtcaacgtggcagtg |
351 |
Q |
| |
|
|||||||||||||||| ||| | | |||||||||| |||||||||||| ||||| |
|
|
| T |
43328508 |
ttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtg |
43328455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 26462662 - 26462710
Alignment:
| Q |
297 |
attacattaaattatttaattgttttaaattattatcagtgtcaacgtg |
345 |
Q |
| |
|
|||||||| |||||||| ||| | ||||||||||||||||||| ||||| |
|
|
| T |
26462662 |
attacattcaattatttcattttcttaaattattatcagtgtcgacgtg |
26462710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University