View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6464_low_9 (Length: 358)
Name: NF6464_low_9
Description: NF6464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6464_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 13998234 - 13998350
Alignment:
| Q |
19 |
cattcacattcatattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggatt-aaaaaatacaataaagtagt |
117 |
Q |
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| T |
13998234 |
cattcacattcagattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggattaaaaaaatacaataaagtagt |
13998333 |
T |
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| Q |
118 |
ataaaaagatgtcattt |
134 |
Q |
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| T |
13998334 |
ataaaaatatgtcattt |
13998350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 3962506 - 3962424
Alignment:
| Q |
19 |
cattcacattcatattgagatgctgaaaaatgaactactccctccatttcaaataagtgaaggttgttgtacacggattaaaa |
101 |
Q |
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| T |
3962506 |
cattcacattcatattgagatgctgaaaaatgaactacttcctccatttcaaataagtgaaggttgttgtacacggatcaaaa |
3962424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 32462906 - 32462980
Alignment:
| Q |
241 |
catttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagc |
315 |
Q |
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| T |
32462906 |
catttgttccgctgatctgtactatttacaagaacatgctattcaatttgcttatttatcaggcggtttgcgagc |
32462980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 9605775 - 9605864
Alignment:
| Q |
232 |
ttggtttggcatttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcg |
321 |
Q |
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| T |
9605775 |
ttggcttgacatttgttctgctgatccgtattatttacagaaacatgatattcagtttgcttatttatcaggcagtttgcaagcacgtcg |
9605864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 9833346 - 9833435
Alignment:
| Q |
232 |
ttggtttggcatttcttcggctgatttgtgttatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcg |
321 |
Q |
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| T |
9833346 |
ttggcttgacatttgttctgctgatccgtattatttacagaaacatgatattcagtttgcttatttatcaggcagtttgcaagcacgtcg |
9833435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 32734318 - 32734266
Alignment:
| Q |
263 |
tatttataggaacatgttattcagtttgcatatttatcaggcggtttgcgagc |
315 |
Q |
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| T |
32734318 |
tatttataggaacatgctattgaatttgcttatttatcaggcggtttacgagc |
32734266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 2365405 - 2365346
Alignment:
| Q |
270 |
aggaacatgttattcagtttgcatatttatcaggcggtttgcgagctcgtcgtacttttt |
329 |
Q |
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| T |
2365405 |
aggagcatgctattcagtttgcttattcatcaggaggtttgagagctcgtcgttcttttt |
2365346 |
T |
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