View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6465_high_3 (Length: 422)
Name: NF6465_high_3
Description: NF6465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6465_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 7754077 - 7754470
Alignment:
| Q |
19 |
catcattccttctactttagtacttccctaaagaaaatacatgnnnnnnnnnnnntacattaagaacaaaattcttaccaatagaacttagtacatgcca |
118 |
Q |
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| T |
7754077 |
catcattccttctactttagtacttccctaaagaaaatacatgaaaaataaaaaatacattaagaacaaaattcttaccaatagaacttagtacatgcca |
7754176 |
T |
|
| Q |
119 |
aagttcaaaaataaaaaggtctattaagaaagtaaaaatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754177 |
aagttcaaaaataaaaaggtctattaagaaagtaaagatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatc |
7754276 |
T |
|
| Q |
219 |
tgctacgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7754277 |
tgctacgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaac |
7754376 |
T |
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| Q |
319 |
agttatgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttg |
412 |
Q |
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| T |
7754377 |
agttatgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttg |
7754470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 114 - 412
Target Start/End: Original strand, 7761271 - 7761569
Alignment:
| Q |
114 |
tgccaaagttcaaaaataaaaaggtctattaagaaagtaaaaatgatataattcttaccaaatttcctttcagtacatcaagaacatctttatgagacca |
213 |
Q |
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| T |
7761271 |
tgccaaagttaaaaaaaagaaaggtatattaacaaagtaaaaatgatataattctcactaagtttcctttcagtacaccgagaacatcgtgatgagacca |
7761370 |
T |
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| Q |
214 |
caatctgctacgttcaccagggtttgatgttgattctttccgtacaatctctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttca |
313 |
Q |
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|||||||| |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |
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| T |
7761371 |
taatctgctgcgttcaccagggtttgatgtcgactccttccgaacaatctctctacccatgtcttgtattaaatcatgcatttctatacaaccattttca |
7761470 |
T |
|
| Q |
314 |
tcaacagttatgagacatttactattaaacgctcgtataactgggtagaaatcacaagcgtctagtatccttttagcataatcccatctttcccctttg |
412 |
Q |
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| T |
7761471 |
tcaacagttaagagacatttactaacaaatactcgtataactgggaaaaaatcacaagcttcttgtatccttttaacataatcccatctttcccctttg |
7761569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 164 - 412
Target Start/End: Original strand, 7837738 - 7837986
Alignment:
| Q |
164 |
attcttaccaaatttcctttcagtacatcaagaacatctttatgagaccacaatctgctacgttcaccagggtttgatgttgattctttccgtacaatct |
263 |
Q |
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||||||||||| ||||||||||| ||||||||| |||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| | ||||| |
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| T |
7837738 |
attcttaccaagtttcctttcagcacatcaagagcatctttatgagaccataacctgctgcgttcaccagggtttgaagtcgattctttccgaataatct |
7837837 |
T |
|
| Q |
264 |
ctctacccatgtcttgtattagatcatgcatttgtagcaaaccattttcatcaacagttatgagacatttactattaaacgctcgtataactgggtagaa |
363 |
Q |
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| T |
7837838 |
ctctacccatgtcttgtattagatcatgcatctctaaacaaccattttcatcaacaattaacagacatttgctaacaaagactcgtataactgggtagaa |
7837937 |
T |
|
| Q |
364 |
atcacaagcgtctagtatccttttagcataatcccatctttcccctttg |
412 |
Q |
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| ||||||| || |||||||||||| |||||||||||||||| |||||| |
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| T |
7837938 |
accacaagcatcgagtatccttttaacataatcccatctttcgcctttg |
7837986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 7828538 - 7828501
Alignment:
| Q |
257 |
acaatctctctacccatgtcttgtattagatcatgcat |
294 |
Q |
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|||| |||||||||||| |||||||||||||||||||| |
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| T |
7828538 |
acaacctctctacccatatcttgtattagatcatgcat |
7828501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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