View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6465_low_1 (Length: 721)

Name: NF6465_low_1
Description: NF6465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6465_low_1
NF6465_low_1
[»] chr4 (7 HSPs)
chr4 (381-703)||(35160337-35160660)
chr4 (461-690)||(35154027-35154256)
chr4 (244-378)||(19514448-19514582)
chr4 (581-679)||(15555089-15555187)
chr4 (554-649)||(37147405-37147500)
chr4 (526-567)||(16298996-16299037)
chr4 (332-381)||(32226977-32227026)
[»] chr8 (4 HSPs)
chr8 (478-698)||(9693355-9693575)
chr8 (478-699)||(9677613-9677834)
chr8 (560-639)||(21465976-21466055)
chr8 (526-567)||(30652024-30652065)
[»] chr3 (16 HSPs)
chr3 (480-676)||(5155186-5155382)
chr3 (481-680)||(46469609-46469808)
chr3 (481-680)||(4582494-4582693)
chr3 (524-677)||(46478252-46478405)
chr3 (506-650)||(46489970-46490120)
chr3 (493-680)||(16023878-16024065)
chr3 (523-597)||(51942063-51942137)
chr3 (490-680)||(46497271-46497467)
chr3 (587-699)||(47398291-47398403)
chr3 (587-699)||(47414935-47415047)
chr3 (326-381)||(50461043-50461098)
chr3 (326-381)||(19468801-19468856)
chr3 (595-678)||(46507118-46507201)
chr3 (551-690)||(46550265-46550404)
chr3 (560-678)||(45900894-45901012)
chr3 (547-628)||(46543099-46543180)
[»] chr2 (5 HSPs)
chr2 (543-680)||(20143500-20143637)
chr2 (523-649)||(20154385-20154511)
chr2 (543-680)||(20169873-20170010)
chr2 (326-381)||(32284489-32284544)
chr2 (526-567)||(39548117-39548158)
[»] chr5 (1 HSPs)
chr5 (225-378)||(24118439-24118592)
[»] chr1 (3 HSPs)
chr1 (273-381)||(38505954-38506062)
chr1 (526-567)||(33097480-33097521)
chr1 (225-264)||(17725982-17726021)
[»] chr6 (2 HSPs)
chr6 (526-677)||(16967863-16968014)
chr6 (293-381)||(34704052-34704140)
[»] chr7 (2 HSPs)
chr7 (306-378)||(39266837-39266909)
chr7 (324-378)||(48846901-48846955)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 381 - 703
Target Start/End: Original strand, 35160337 - 35160660
Alignment:
Q  381 aagcggcaaggtaaacccttttgcagctattacattgcacaaaagccctaca-agactcctgaagaagaagaaaaacaacaacaatggcgactcagcgtg 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35160337 aagcggcaaggtaaacccttttgcagctattacattgcacaaaagccctacagagactcctgaagaagaagaaaaacaacaacaatggcgactcagcgtg 35160436  T
Q  480 atgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctct 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35160437 atgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctct 35160536  T
Q  580 ccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcc 679  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35160537 ccaagttgtgctcagcataatcactgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcc 35160636  T
Q  680 tcagtctctcatctactttccatc 703  Q
    ||||||||||||| ||||||||||    
T  35160637 tcagtctctcatcaactttccatc 35160660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 461 - 690
Target Start/End: Original strand, 35154027 - 35154256
Alignment:
Q  461 acaatggcgactcagcgtgatgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcg 560  Q
    ||||||||| || ||| |||||||||||||  |||||| ||||||||||| ||||| || | ||||||||| ||||| || |||||||||||||| ||||    
T  35154027 acaatggcggcttagcatgatgaatcaagctgcaaccatacgaaagtttccctcactatcgccaaacatcttttctcaaaggaatcagaaaagaatatcg 35154126  T
Q  561 tgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatc 660  Q
    |||||||||| |||||||||||||| |||||    || ||||||||||||||||| ||||| |||| ||||||||||||  |||||||||  ||||||||    
T  35154127 tgttttcgcctttgtctctccaagtagtgcttgcaatcatcgctgctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatc 35154226  T
Q  661 cactgatcatctcaactcctcagtctctca 690  Q
    | |  |||||||||||||||  ||||||||    
T  35154227 cgcctatcatctcaactccttcgtctctca 35154256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 19514582 - 19514448
Alignment:
Q  244 atttgaatttcaaagtggggatagaataagagggaaaatttggagggttaagttactaatcacaattaatgaaggatcaatggagggaaaaattaggtta 343  Q
    |||||||||||||| | || |||||| | ||||||||||||| |||||||||  || | |  ||||||||||||| | | | ||||||||||||||||||    
T  19514582 atttgaatttcaaattaggcatagaagaggagggaaaatttgtagggttaagggaccattagcaattaatgaaggtttattagagggaaaaattaggtta 19514483  T
Q  344 acatgttgcaagacctaataagcatttagagtaag 378  Q
    | | |||||||||||| |||||| |||||| ||||    
T  19514482 aaaggttgcaagaccttataagcttttagaataag 19514448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 581 - 679
Target Start/End: Original strand, 15555089 - 15555187
Alignment:
Q  581 caagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcc 679  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||   |||| |||||||||    
T  15555089 caagttattctcagcatcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcctccgctttaaatccatccatcaactcaactcc 15555187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 554 - 649
Target Start/End: Original strand, 37147405 - 37147500
Alignment:
Q  554 aacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctc 649  Q
    ||||| ||||||||||| ||||| ||||||||||| || || || ||||||||||||||  ||||| | |||||||||||  |||| |||||||||    
T  37147405 aacattgtgttttcgcccttgtcgctccaagttgttctaagtattatcgctgctggctccaagggtcccacacaacaacaaattctcgacttcctc 37147500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 16298996 - 16299037
Alignment:
Q  526 acatctcttctccaaagaatcagaaaagaacatcgtgttttc 567  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  16298996 acatctcttctccaaagaatcagacaacaacatcgtgttttc 16299037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 32226977 - 32227026
Alignment:
Q  332 aaaattaggttaacatgttgcaagacctaataagcatttagagtaaggga 381  Q
    |||||||||||||   ||||| ||||||||||||||||||||||||||||    
T  32226977 aaaattaggttaaatggttgctagacctaataagcatttagagtaaggga 32227026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 478 - 698
Target Start/End: Complemental strand, 9693575 - 9693355
Alignment:
Q  478 tgatgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtct 577  Q
    |||||||||||||| ||||||| ||||| |||| |||||||| | ||||||||||||||| ||||||||||| |||||  |||| ||||| |||||||||    
T  9693575 tgatgaatcaagcaccaaccaagcgaaattttccctcaccatcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtct 9693476  T
Q  578 ctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 677  Q
    ||||||||||| |||||||| ||||||| ||||||||| ||| | || |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  9693475 ctccaagttgttctcagcatcatcgctgttggctctgacggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaact 9693376  T
Q  678 cctcagtctctcatctacttt 698  Q
     ||  ||||||||||| ||||    
T  9693375 tctttgtctctcatctccttt 9693355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 478 - 699
Target Start/End: Complemental strand, 9677834 - 9677613
Alignment:
Q  478 tgatgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtct 577  Q
    |||| ||||||||| ||||||  |||||||||| |||||  | | ||||||||||||||| ||||||||||| || ||| |||| ||||| |||||||||    
T  9677834 tgatcaatcaagcaccaaccatgcgaaagtttccctcacggtcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtct 9677735  T
Q  578 ctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 677  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  9677734 ctccaagttgttctcagtatcatcgctgctggctctgagggtcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaact 9677635  T
Q  678 cctcagtctctcatctactttc 699  Q
    |||  ||||||||||| |||||    
T  9677634 ccttcgtctctcatctcctttc 9677613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 560 - 639
Target Start/End: Complemental strand, 21466055 - 21465976
Alignment:
Q  560 gtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttct 639  Q
    |||||||||||||| || |||||  ||||| | ||||| ||||||||||||||||| ||| | ||||||||||| |||||    
T  21466055 gtgttttcgccattatcactccacattgtgttgagcatcatcgctgctggctctgaaggtccgacacaacaacaacttct 21465976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 30652024 - 30652065
Alignment:
Q  526 acatctcttctccaaagaatcagaaaagaacatcgtgttttc 567  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  30652024 acatctcttctccaaagaatcagacaacaacatcgtgttttc 30652065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 480 - 676
Target Start/End: Original strand, 5155186 - 5155382
Alignment:
Q  480 atgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctct 579  Q
    ||||||||| || ||||||||| || ||||| ||   ||| | ||||||||| ||||  ||||||| ||| |||||||| |||||||||||| |||||||    
T  5155186 atgaatcaatcaccaaccaaacaaatgtttccctacgcatcgccaaacatctgttcttgaaagaattagacaagaacattgtgttttcgccactgtctct 5155285  T
Q  580 ccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaac 676  Q
     |||||||| || ||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||  | |||||||||||| |||||||||    
T  5155286 tcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaacagcttctcgacttcctcctgtccaaatccactgaccatctcaac 5155382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 481 - 680
Target Start/End: Original strand, 46469609 - 46469808
Alignment:
Q  481 tgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctc 580  Q
    |||||||| || ||||||||| |||||||| || | ||| | ||||||||||||||| ||||||||||| |||||| | |||||||||||  |||| |||    
T  46469609 tgaatcaatcaccaaccaaaccaaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactc 46469708  T
Q  581 caagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcct 680  Q
    |||||| |||||| |||  ||||||||| ||||||||||   ||||||||||| ||||| || |||||||||| ||||||||  || |||||||||||||    
T  46469709 caagttatgctcaacattgtcgctgctgcctctgagggtcgtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaactcct 46469808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 481 - 680
Target Start/End: Complemental strand, 4582693 - 4582494
Alignment:
Q  481 tgaatcaagcaacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctc 580  Q
    |||||||| ||  |||||||| |||||||| ||||  || | |||| |||||||||| ||||||||||| |||||||| |||||||| ||| | || |||    
T  4582693 tgaatcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctc 4582594  T
Q  581 caagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcct 680  Q
    ||||||| ||||||||| ||||||||||||||||| ||  | |||  | |||||||||| |||||||| |  | |||||| |||||||||||||||||||    
T  4582593 caagttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaactcct 4582494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 524 - 677
Target Start/End: Original strand, 46478252 - 46478405
Alignment:
Q  524 aaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaa 623  Q
    |||||||||||||||||||||||||| || |||||||||||||| ||| | || |||||||||||||| || ||||||||| |||| ||||||||| | |    
T  46478252 aaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtccca 46478351  T
Q  624 cacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 677  Q
    | |||||||| ||| |  ||||||| |  | ||||||||| |||||||||||||    
T  46478352 ctcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaact 46478405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 506 - 650
Target Start/End: Original strand, 46489970 - 46490120
Alignment:
Q  506 gtttctctcaccattgtcaaacatctcttctccaaagaatca-----gaa-aagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataa 599  Q
    ||||| |||||||| | ||||||||| ||||||||||||||      ||| |||||||| ||||| |||||| | || ||||||||||| |||||||| |    
T  46489970 gtttccctcaccatcgccaaacatcttttctccaaagaatctcaccggaacaagaacattgtgttatcgccactttcgctccaagttgtactcagcatca 46490069  T
Q  600 tcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctcc 650  Q
    |||||||||||||||| || || ||||||||||||||||||||||||||||    
T  46490070 tcgctgctggctctgacggctccacacaacaacagcttcttgacttcctcc 46490120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 493 - 680
Target Start/End: Original strand, 16023878 - 16024065
Alignment:
Q  493 caaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctc 592  Q
    ||||||||| || || || |||| ||| |||||||||||||| || ||| ||||||| || |||||| ||||||| ||  | || || |||||||| |||    
T  16023878 caaccaaaccaacgtatccctcaacatcgtcaaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctc 16023977  T
Q  593 agcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcct 680  Q
    ||| | ||||||||||| || |||||  | |||||||||||||||||  |||||||||| | | |||| ||  || ||||||||||||    
T  16023978 agccttatcgctgctggatccgagggaccgacacaacaacagcttctccacttcctccgctccgaatctaccaataatctcaactcct 16024065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 523 - 597
Target Start/End: Original strand, 51942063 - 51942137
Alignment:
Q  523 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcat 597  Q
    ||||||| | ||||| ||| |||||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  51942063 caaacatttgttctcaaaacaatcagaaaacaacatcgtcttttcgccattgtctctgcaagttgtgctcagcat 51942137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 490 - 680
Target Start/End: Original strand, 46497271 - 46497467
Alignment:
Q  490 caacaaccaaacgaaagtttctctcaccattgtcaaacatctcttctccaaagaatc------agaaaagaacatcgtgttttcgccattgtctctccaa 583  Q
    |||||||||||  || ||||| |||||||| | ||||||||| ||||||||||||||      ||| ||||| || ||||| || ||| | || || |||    
T  46497271 caacaaccaaaacaacgtttccctcaccatcgccaaacatcttttctccaaagaatctcatcaagacaagaatatggtgttatctccactttcactacaa 46497370  T
Q  584 gttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcct 680  Q
    |||||||| ||||| |||||| ||||||| |||||  | ||||||||||| |||||  |||||||||  | |||||||||  |||| ||||||||||    
T  46497371 gttgtgctaagcatcatcgctactggctccgagggccccacacaacaacaacttctcaacttcctccaatccaaatccacctatcaactcaactcct 46497467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 587 - 699
Target Start/End: Complemental strand, 47398403 - 47398291
Alignment:
Q  587 gtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcctcagtct 686  Q
    ||||| ||||| | ||||||||||||||||||| | ||||||||| ||||||| ||||||||  | | ||| |||||||| |||||||||||||  | ||    
T  47398403 gtgctaagcatcaacgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactccttcgcct 47398304  T
Q  687 ctcatctactttc 699  Q
    ||||||| |||||    
T  47398303 ctcatctcctttc 47398291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 587 - 699
Target Start/End: Complemental strand, 47415047 - 47414935
Alignment:
Q  587 gtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcctcagtct 686  Q
    ||||||| ||| || || ||||||||||||||| | ||||| ||| ||||||| ||||||||| | |  ||||||| |||||||||||||||||  | ||    
T  47415047 gtgctcatcatcattgcggctggctctgagggtaccacacatcaaaagcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcct 47414948  T
Q  687 ctcatctactttc 699  Q
    ||||||| |||||    
T  47414947 ctcatctcctttc 47414935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 50461098 - 50461043
Alignment:
Q  326 gagggaaaaattaggttaacatgttgcaagacctaataagcatttagagtaaggga 381  Q
    |||||||||||||||||||   ||||| ||||||||||||||||||||||||||||    
T  50461098 gagggaaaaattaggttaaatggttgctagacctaataagcatttagagtaaggga 50461043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 19468856 - 19468801
Alignment:
Q  326 gagggaaaaattaggttaacatgttgcaagacctaataagcatttagagtaaggga 381  Q
    ||||||||||||||||| |    |||||||||||||||||||||||||||||||||    
T  19468856 gagggaaaaattaggtttagtgcttgcaagacctaataagcatttagagtaaggga 19468801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 595 - 678
Target Start/End: Complemental strand, 46507201 - 46507118
Alignment:
Q  595 cataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactc 678  Q
    |||||||||||| |||||||||||| | || ||||||||| |||||||||||||| | | |||||| |   |||||||||||||    
T  46507201 cataatcgctgccggctctgagggtcccactcaacaacagattcttgacttcctctgctccaaatctatccatcatctcaactc 46507118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 551 - 690
Target Start/End: Complemental strand, 46550404 - 46550265
Alignment:
Q  551 aagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctcc 650  Q
    ||||||||| | ||||| || ||||| || ||||||||||||| ||| || ||||||||||| || ||| | ||| ||||||| |||||    |||||||    
T  46550404 aagaacatcatattttctcccttgtcccttcaagttgtgctcaacatcatagctgctggctccgacggtcctacaaaacaacaacttctgtctttcctcc 46550305  T
Q  651 gtttcaaatccactgatcatctcaactcctcagtctctca 690  Q
    | | ||||||||| |||||||| || |||| || ||||||    
T  46550304 gatccaaatccacggatcatcttaattccttagcctctca 46550265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 560 - 678
Target Start/End: Original strand, 45900894 - 45901012
Alignment:
Q  560 gtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttgacttcctccgtttcaaat 659  Q
    |||||||| ||| | || ||||||||| | |||||||| || ||||||||  |||||||| |||||||||| |||||| |  |||||||||  ||  |||    
T  45900894 gtgttttctccactctcgctccaagttattctcagcatcattgctgctggtgctgagggtccaacacaacagcagcttatccacttcctccaatttgaat 45900993  T
Q  660 ccactgatcatctcaactc 678  Q
    |||| || |||||||||||    
T  45900994 ccaccgaccatctcaactc 45901012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 628
Target Start/End: Original strand, 46543099 - 46543180
Alignment:
Q  547 agaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaa 628  Q
    |||||||||| | |||||||| || ||||| ||||| ||||||||||||||||| || || ||| |||||||| | ||||||    
T  46543099 agaaaagaacgttgtgttttcacctttgtcactccacgttgtgctcagcataattgcggccggcgctgagggtcccacacaa 46543180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 543 - 680
Target Start/End: Original strand, 20143500 - 20143637
Alignment:
Q  543 aatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttga 642  Q
    ||||||| ||||||||||||||||||||| | || |||||| ||||||||||| | ||||||||||| ||||| | | | ||||||||||| ||| | ||    
T  20143500 aatcagacaagaacatcgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttgtcga 20143599  T
Q  643 cttcctccgtttcaaatccactgatcatctcaactcct 680  Q
    ||||||||| |||||||||||  ||||||| |||||||    
T  20143600 cttcctccgcttcaaatccaccaatcatcttaactcct 20143637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 523 - 649
Target Start/End: Original strand, 20154385 - 20154511
Alignment:
Q  523 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttca 622  Q
    ||||||||| ||||  ||| ||||||| |||||||| |||||||||||| |||| |||||||||||| ||||| | | ||||||||||||||| ||| |     
T  20154385 caaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaaggtccc 20154484  T
Q  623 acacaacaacagcttcttgacttcctc 649  Q
    ||||||||||||||| | |||||||||    
T  20154485 acacaacaacagcttgtcgacttcctc 20154511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 680
Target Start/End: Complemental strand, 20170010 - 20169873
Alignment:
Q  543 aatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaacacaacaacagcttcttga 642  Q
    ||||||| || ||| |||||||||| ||| | || || ||| ||||||||||| | || ||| |||| ||||| ||| | ||| ||||||| ||| | ||    
T  20170010 aatcagacaaaaacgtcgtgttttcaccactatcacttcaaattgtgctcagccttattgctactggttctgaaggtcccacaaaacaacaacttgtcga 20169911  T
Q  643 cttcctccgtttcaaatccactgatcatctcaactcct 680  Q
    |||||||||||||||||||||  |||||||||| ||||    
T  20169910 cttcctccgtttcaaatccaccaatcatctcaattcct 20169873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 32284544 - 32284489
Alignment:
Q  326 gagggaaaaattaggttaacatgttgcaagacctaataagcatttagagtaaggga 381  Q
    |||||||||||||| ||||  |||||  |||||||||||||||||||| |||||||    
T  32284544 gagggaaaaattagattaaagtgttgttagacctaataagcatttagaataaggga 32284489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 39548117 - 39548158
Alignment:
Q  526 acatctcttctccaaagaatcagaaaagaacatcgtgttttc 567  Q
    |||||||||||||||||||||||| || |||||| |||||||    
T  39548117 acatctcttctccaaagaatcagacaacaacatcatgttttc 39548158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 225 - 378
Target Start/End: Complemental strand, 24118592 - 24118439
Alignment:
Q  225 ggaaaaccaaacaatcatgatttgaatttcaaagtggggatagaataagagggaaaatttggagggttaagttactaatcacaattaatgaaggatcaat 324  Q
    ||||||| |||| ||||  |||||||||||||| | || |||||| | ||||||||||||| | |||||||  || | |  ||||||||||||| | | |    
T  24118592 ggaaaactaaaccatcagtatttgaatttcaaattaggcatagaagaggagggaaaatttgtaaggttaagggaccattagcaattaatgaaggtttatt 24118493  T
Q  325 ggagggaaaaattaggttaacatgttgcaagacctaataagcatttagagtaag 378  Q
     ||||||||||||||||||| | |||||||||||| |||||| || ||||||||    
T  24118492 agagggaaaaattaggttaaaaggttgcaagaccttataagctttcagagtaag 24118439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 273 - 381
Target Start/End: Complemental strand, 38506062 - 38505954
Alignment:
Q  273 gagggaaaatttggagggttaagttactaatcacaattaatgaaggatcaatggagggaaaaattaggttaacatgttgcaagacctaataagcatttag 372  Q
    ||||||||| |||||||||||||| |||||| |||||||||| | ||| | | ||||||||| |||||||||   || ||| ||||||||||||||||||    
T  38506062 gagggaaaaattggagggttaagtgactaataacaattaatgcaagattattagagggaaaatttaggttaagtggtagcatgacctaataagcatttag 38505963  T
Q  373 agtaaggga 381  Q
    | |||||||    
T  38505962 aataaggga 38505954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 526 - 567
Target Start/End: Original strand, 33097480 - 33097521
Alignment:
Q  526 acatctcttctccaaagaatcagaaaagaacatcgtgttttc 567  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  33097480 acatctcttctccaaagaatcagacaacaacatcgtgttttc 33097521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 264
Target Start/End: Original strand, 17725982 - 17726021
Alignment:
Q  225 ggaaaaccaaacaatcatgatttgaatttcaaagtgggga 264  Q
    |||||||||||||| || ||||||||||||||||||||||    
T  17725982 ggaaaaccaaacaaccaggatttgaatttcaaagtgggga 17726021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 526 - 677
Target Start/End: Complemental strand, 16968014 - 16967863
Alignment:
Q  526 acatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcgctgctggctctgagggttcaaca 625  Q
    |||||| |||||||||||||| || || |||||||||||||| ||| | || |||||||||||| | ||||||||||||  ||| ||||||||| | ||     
T  16968014 acatctattctccaaagaatcggacaacaacatcgtgttttcaccactctcactccaagttgtgttaagcataatcgcttttggttctgagggtcccact 16967915  T
Q  626 caacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaact 677  Q
    |||||||| ||| |  | |||||||  | ||||||||  |||||||||||||    
T  16967914 caacaacaacttttcaaattcctccaatccaaatccatcgatcatctcaact 16967863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 34704140 - 34704052
Alignment:
Q  293 aagttactaatcacaattaatgaaggatcaatggagggaaaaattaggttaacatgttgcaagacctaataagcatttagagtaaggga 381  Q
    |||| |||||| ||||||||||   ||| | | ||||||||||||||||| |   || ||||||||||||||||||||||| |||||||    
T  34704140 aagtgactaattacaattaatgctagataattagagggaaaaattaggtttagtagtagcaagacctaataagcatttagaataaggga 34704052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 39266837 - 39266909
Alignment:
Q  306 caattaatgaaggatcaatggagggaaaaattaggttaacatg-ttgcaagacctaataagcatttagagtaag 378  Q
    ||||||||||||||| | | ||||||||||||||||||| ||| | ||||||||||||||||||||||| ||||    
T  39266837 caattaatgaaggattattagagggaaaaattaggttaa-atgatagcaagacctaataagcatttagaataag 39266909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 48846901 - 48846955
Alignment:
Q  324 tggagggaaaaattaggttaacatgttgcaagacctaataagcatttagagtaag 378  Q
    |||||||||||||||||||||  | | ||||||||||||||||||||||| ||||    
T  48846901 tggagggaaaaattaggttaaactatagcaagacctaataagcatttagaataag 48846955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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