View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6465_low_2 (Length: 506)
Name: NF6465_low_2
Description: NF6465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6465_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Original strand, 36372612 - 36373086
Alignment:
| Q |
15 |
aacctgtggaactcataaaaattgagtctgggaaaactaccgtagatttcatccatgcacaaaatattcatagtcatttgttatcggacattcggatacg |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
36372612 |
aacctgtggaactcataaaaattgagtctgggaaaactatcgtaaatttcatccatgcgcaaaatattcatagtcatttgttatcggacattcggttacg |
36372711 |
T |
|
| Q |
115 |
atcaagacaagctactccggctgattgctccagtttcataagacctggaattgacatatctgtgctatcaagctttgagtacaataaaaattcacgtcaa |
214 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
36372712 |
atcaagagaagctactccggctgattgctccagtttcgtaagacctggaattgacatatctgtgctatcaagctttgaatacaataaaaaatcacgtcaa |
36372811 |
T |
|
| Q |
215 |
tctagcccagtaagttcaatcttcttagttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttatttattattc-ttag |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
36372812 |
tctagcccagtaagttcaatcttcttagttatatatagtttttattaaactacatttcttactctcattcttctgtatacatttatttattattctttag |
36372911 |
T |
|
| Q |
314 |
tttattgatatttgtattttttgtaaattgtagatgtcgactgatgctagagtgaattccatacacagacagcctcataaatctgataactgttcatgtc |
413 |
Q |
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||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||| |||||||| | ||||| |||||||| | |||||||||| |
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| T |
36372912 |
tttattgatatttata-tttttgtaaactgtagatatcgactgatgctagagtgaattccgtacacagaaaacctcacaaatctgaccaatgttcatgtc |
36373010 |
T |
|
| Q |
414 |
agtttcatgtaaatttctataatgatcaagattcagttgatacagagataagaactctgaagaaagatgttagtgt |
489 |
Q |
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|||| | |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
36373011 |
ggtttaaagtaaatttttataatgatcaagattcagttggtacagagataagaactctgaagaaagaggttagtgt |
36373086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 8732115 - 8731980
Alignment:
| Q |
15 |
aacctgtggaactcataaaaattgagtctgggaaaactaccgtagatttcatccatgcacaaaatattcatagtcatttgttatcggacattcggatacg |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
8732115 |
aacctgtggaactcataaaaattgagtatgggaaaactagcgtaaatttcatccatgcacaaaatattgatagtcgtttgttatcggacattcggatacg |
8732016 |
T |
|
| Q |
115 |
atcaagacaagctactccggctgattgctccagttt |
150 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||| |
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| T |
8732015 |
atcaagagaagctactacggctgattgctccagttt |
8731980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 9084002 - 9083867
Alignment:
| Q |
15 |
aacctgtggaactcataaaaattgagtctgggaaaactaccgtagatttcatccatgcacaaaatattcatagtcatttgttatcggacattcggatacg |
114 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
9084002 |
aacctgtggaactcataaaaattgagtatgggaaaactagcgtaaatttcatccatgcacaaaatattgatagtcgtttgttatcggacattcggatacg |
9083903 |
T |
|
| Q |
115 |
atcaagacaagctactccggctgattgctccagttt |
150 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |
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| T |
9083902 |
atcaagagaagctactacggctgattgctccagttt |
9083867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 485
Target Start/End: Complemental strand, 32252955 - 32252802
Alignment:
| Q |
332 |
ttttgtaaattgtagatgtcgactgatgctagagtgaattccatacacagacagcctcataaatctgataactgttcatgtcagtttcatgtaaatttct |
431 |
Q |
| |
|
||||||||||||||||||| || |||||| ||| | ||||| ||||| ||||| ||||| ||||| ||| | ||||||||||| ||| ||||||| || | |
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| T |
32252955 |
ttttgtaaattgtagatgtggattgatgcaagaataaattctatacatagacaacctcacaaatccgatcaatgttcatgtcaattttatgtaaactttt |
32252856 |
T |
|
| Q |
432 |
ataatgatcaagattcagttgatacagagataagaactctgaagaaagatgtta |
485 |
Q |
| |
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|| | ||||||| |||| ||| ||||||| ||| |||||| || ||||| |||| |
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|
| T |
32252855 |
atgacgatcaaggttcacttggtacagaggtaaaaactcttaataaagaggtta |
32252802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 182
Target Start/End: Complemental strand, 32253404 - 32253313
Alignment:
| Q |
91 |
tttgttatcggacattcggatacgatcaagacaagctactccggctgattgctccagtttcataagacctggaattgacatatctgtgctat |
182 |
Q |
| |
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||||| ||| || ||||||||| ||||||| |||||||| | ||||||||||||| || || ||||||||||||| |||||| |||||| |
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|
| T |
32253404 |
tttgtcatccgatattcggataagatcaaggaaagctacttcatctgattgctccagctttttacgacctggaattgatatatctatgctat |
32253313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 243 - 480
Target Start/End: Original strand, 11415560 - 11415797
Alignment:
| Q |
243 |
ttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttatttattattctt-agtttattgatatttgtattttttgtaaat |
341 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| ||||||| || ||| ||||||||| ||||||| ||||||||||||||| ||||||| | |||| |
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|
| T |
11415560 |
ttatatatagttttcattaaactacgtttctttgtctcattattatatatgcatttatttgctattctttagtttattgatatttatattttt-gcaaat |
11415658 |
T |
|
| Q |
342 |
tgtagatgtcgactgatgctagagtgaattccatacacagacagcctcataaatctgataactgttcatgtcagtttcatgtaaatttctataatgatca |
441 |
Q |
| |
|
||||||||| ||| ||||||||| ||||||||||||||||| ||| | |||||||| | | ||||||||| ||||||||||||||||| ||||||| |
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|
| T |
11415659 |
tgtagatgtggacagatgctagaccaaattccatacacagacaacctaacgaatctgatcaatattcatgtcaatttcatgtaaatttctacgatgatca |
11415758 |
T |
|
| Q |
442 |
agattcagttgatacagagataagaactctgaagaaaga |
480 |
Q |
| |
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|| |||| ||| |||| || ||| ||||||||| ||||| |
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|
| T |
11415759 |
aggttcacttggtacaaagttaaaaactctgaataaaga |
11415797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 8847179 - 8847100
Alignment:
| Q |
221 |
ccagtaagttcaatcttcttagttatatatagtttttattaaactacatttcttactctcattcttccgtatacatttat |
300 |
Q |
| |
|
|||||||||| |||||| | | | ||||||| ||||||||||||| |||||||| ||| ||||||| |||||||||||| |
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|
| T |
8847179 |
ccagtaagtttaatcttttaaatcatatataatttttattaaacttgatttcttagtcttattcttctgtatacatttat |
8847100 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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