View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6465_low_4 (Length: 364)
Name: NF6465_low_4
Description: NF6465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6465_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 12803931 - 12803592
Alignment:
| Q |
9 |
gaagaatatggtcgtaaacaaaagttaaaatagggcaagaccattgaagctttttgttgtgttagtttatgcgtgggttttagtggaggatatggcagtg |
108 |
Q |
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| T |
12803931 |
gaagaaaatggtcgtaaacaaaagttaaaatagggcaagaccattgaagctttttgttgtgttagtttatgcgtgggttttagtggaggatatggcagtg |
12803832 |
T |
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| Q |
109 |
tagactgcttgcacgtgagtacagtgtataaatggggttcaaaaaattgaaaatgtttttaagatgaaatacnnnnnnnccaaaacaatctcaacttatt |
208 |
Q |
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| T |
12803831 |
tagactgcttgcacgtgagtacagtgtataaatggggttcaaaaaattgaaaatgtttttaagatgaaatacaaaaaaaccaaaacaatctcaacttatt |
12803732 |
T |
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| Q |
209 |
ttcttttgttgtgctttgggaacaacgccacttttatgcttattcccattcacatgttgttaaaccagcgcagtgtgatactgtgtttgttctcacatga |
308 |
Q |
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| T |
12803731 |
ttcttttgttgtgctttgggaacaacgccacttttatgcttattcccattcacatgttgttaaaccagcacagtgtgatactgtgtttgttctcacatga |
12803632 |
T |
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| Q |
309 |
gttgaacttgcttggttttgttttcttttgtcttggaatt |
348 |
Q |
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| T |
12803631 |
gttgaacttgcttggttttgttttcttttgtcttggaatt |
12803592 |
T |
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