View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6465_low_5 (Length: 237)
Name: NF6465_low_5
Description: NF6465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6465_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 37196241 - 37196412
Alignment:
| Q |
1 |
aattaattttcatgtgtaatgaacaaaaatcaactagatgaacnnnnnnngtaatctttttctagagaaattgattttggttccaacttccaagttcatg |
100 |
Q |
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| T |
37196241 |
aattaattttcatgtgtaatgaacaaaaatcaactagatgaacaaaaaaagtaatctttttctagagaaattgattttggttccaacttccaagttcatg |
37196340 |
T |
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| Q |
101 |
tttttattcaatctcatatcaataaaaatgcctcctttaaacaattcctactttttttataacttaaaatca |
172 |
Q |
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| T |
37196341 |
tttttattcaatctcatatcaataaaaatgcctcctttaaacaattcctactttttttataacttaaaatca |
37196412 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 222
Target Start/End: Original strand, 37196401 - 37196431
Alignment:
| Q |
192 |
aacttaaaatcaacacatgaacacaaacagt |
222 |
Q |
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| T |
37196401 |
aacttaaaatcaacacatgaacacaaacagt |
37196431 |
T |
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