View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6466_high_4 (Length: 428)

Name: NF6466_high_4
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6466_high_4
NF6466_high_4
[»] chr8 (6 HSPs)
chr8 (1-421)||(42472677-42473096)
chr8 (10-421)||(42479923-42480345)
chr8 (255-410)||(42467369-42467524)
chr8 (11-193)||(42467568-42467750)
chr8 (31-178)||(33362082-33362229)
chr8 (257-346)||(33362311-33362400)
[»] chr2 (4 HSPs)
chr2 (257-421)||(5087402-5087566)
chr2 (257-399)||(43524041-43524183)
chr2 (22-198)||(43523802-43523978)
chr2 (22-196)||(5087162-5087336)
[»] chr5 (6 HSPs)
chr5 (22-198)||(23122468-23122644)
chr5 (257-379)||(22271611-22271733)
chr5 (257-399)||(23122262-23122404)
chr5 (22-198)||(14008046-14008222)
chr5 (257-399)||(14008286-14008428)
chr5 (31-196)||(22271799-22271964)
[»] chr7 (4 HSPs)
chr7 (257-379)||(31420673-31420795)
chr7 (257-399)||(41595435-41595577)
chr7 (22-198)||(41595195-41595371)
chr7 (31-196)||(31420442-31420607)
[»] chr6 (3 HSPs)
chr6 (257-379)||(95976-96098)
chr6 (98-178)||(95812-95892)
chr6 (257-294)||(9303551-9303588)
[»] chr3 (7 HSPs)
chr3 (257-379)||(2735304-2735426)
chr3 (257-379)||(40924350-40924472)
chr3 (31-196)||(40924119-40924284)
chr3 (257-379)||(22127782-22127904)
chr3 (257-399)||(22510865-22511007)
chr3 (31-196)||(2735073-2735238)
chr3 (135-198)||(22511071-22511134)
[»] scaffold0005 (2 HSPs)
scaffold0005 (257-346)||(41175-41264)
scaffold0005 (31-196)||(40944-41109)
[»] chr4 (2 HSPs)
chr4 (257-346)||(14798464-14798553)
chr4 (31-196)||(14798619-14798784)
[»] chr1 (4 HSPs)
chr1 (257-346)||(27132123-27132212)
chr1 (31-178)||(27129722-27129868)
chr1 (22-192)||(11053942-11054110)
chr1 (257-346)||(25535945-25536034)


Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 42473096 - 42472677
Alignment:
Q  1 tctttctaggtgtgcttcatttcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42473096 tctttctagttgtgcttcatttcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaa 42472997  T
Q  101 ttttgcatagttgttgatggagtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagagcggn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  42472996 ttttgcatagttgttgatggagtttgtgatggaccacaaaaggaacaaatggctcttgttttgagatttgttgataaaaatggttttatacaagagcggt 42472897  T
Q  201 nnnnnngatattgtgcatgttaaagactttgagccatcagaggaagaaatttacgctatactttctcgacacaatcttgatgtttctaacattcgtggtc 300  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42472896 ttttt-gatattgtgcatgttaaagactttgagccatcagaggaagaaatttacgctatactttctcgacacaatcttgatgtttctaatattcgtggtc 42472798  T
Q  301 aagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacactaattttgaatgaatgtccttatgcataccacattcattgttttga 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42472797 aagggtatgatggcactagcgatatgagagaacaatggaatagtttgcagacactaattttgaatgaatgtccttatgcataccacattcattgttttga 42472698  T
Q  401 acataagttgcaacctgcctt 421  Q
    |||||||||||||||||||||    
T  42472697 acataagttgcaacctgcctt 42472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 10 - 421
Target Start/End: Complemental strand, 42480345 - 42479923
Alignment:
Q  10 gtgtgcttcatttcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcata 109  Q
    |||||||||| ||||||||||||||||||||||||   || |||||| | |||||||||  ||||| || |||||||||||||||||||||||||| |||    
T  42480345 gtgtgcttcacttcaatttcgaaaagagatcttgcgagttgtttctagtcaagtgaaaaaccatatccgtgaggaaattggtgattccaaattttgtata 42480246  T
Q  110 gttgttgatggagtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagagcggnnnnnnngat 209  Q
    ||||||||||||| |  ||||  | ||  ||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||       |||    
T  42480245 gttgttgatggagctcttgataaatcaggaaaggaacaaatggcccttgttttgagatttgttgataaaaaggggtttatacaagagcggttgttt-gat 42480147  T
Q  210 attgtgcatgttaaagac------tttgagccatcag------aggaagaaatttacgctatactttctcgacacaatcttgatgtttctaacattcgtg 297  Q
    ||||||||||||||||||      ||||||  ||| |      ||||| || |||  |||||||||||||  || |||||||||||||||||||||||||    
T  42480146 attgtgcatgttaaagacattaattttgaggtatccgctcttaaggaacaagtttgtgctatactttctcagcataatcttgatgtttctaacattcgtg 42480047  T
Q  298 gtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacactaattttgaatgaatgtccttatgcataccacattcattgttt 397  Q
    ||||||||||||||||  |  |||| |||||||||||||||||| |||| ||  ||||| |||||||||||||||||| |||||| ||||||||||||||    
T  42480046 gtcaagggtatgatggtacctgcgaaatgagagaacaatggaatggtttacatgcactatttttgaatgaatgtccttctgcatatcacattcattgttt 42479947  T
Q  398 tgaacataagttgcaacctgcctt 421  Q
    ||  |||||||||||| |||||||    
T  42479946 tgctcataagttgcaatctgcctt 42479923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 255 - 410
Target Start/End: Complemental strand, 42467524 - 42467369
Alignment:
Q  255 gctatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacac 354  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||  |  ||||||||||||||||||||||| | || ||  |||    
T  42467524 gctatactttctcgacataatcttgatgtttctaacattcgtggtcaaggttatgacggtacctgcgatatgagagaacaatggaatggcttacaagcac 42467425  T
Q  355 taattttgaatgaatgtccttatgcataccacattcattgttttgaacataagttg 410  Q
    || |||||||| ||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  42467424 tatttttgaatcaatgtccttctgcatactacattcactgttttgcacataagttg 42467369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 42467750 - 42467568
Alignment:
Q  11 tgtgcttcatttcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatag 110  Q
    ||||||||||||| ||||| |||| | ||||||||| ||||| ||| || ||||||||  ||||| || || |||||||||||||||||||||||||| |    
T  42467750 tgtgcttcatttccatttcaaaaacacatcttgcatgttcttgctagtagagtgaaaaagcatatccgtgacgaaattggtgattccaaattttgcattg 42467651  T
Q  111 ttgttgatggagtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaa 193  Q
    || | ||||||| ||| |||  | ||||| | ||||| ||| ||||| |||||||||||||| ||||||| ||||||| ||||    
T  42467650 ttctggatggagcttgggataaatcacaatatgaacaaatgcctcttattttgagatttgttcataaaaatggttttacacaa 42467568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 33362082 - 33362229
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| ||||| |||||||||| ||  |||| ||  |||||||| || |||||||||||||| ||||||||||| || ||||||| || | |||||    
T  33362082 aaaagagatattgcaaattctttctagtagggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagctcgtgat 33362181  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaa 178  Q
    |   || |||||||||| ||||||||||| || || ||||||||||||    
T  33362182 gagtcaaaaaaggaacaaatggctcttgtgttaaggtttgttgataaa 33362229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 33362311 - 33362400
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttt 346  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||||||| || |||||  ||||||||| | |||||||| ||||    
T  33362311 tatactttctcgacataaccttgatgtttcaaacattcgtggtcaagggtatgacggtgctagaaatatgagaggagaatggaatggttt 33362400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 421
Target Start/End: Original strand, 5087402 - 5087566
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |||||||| |||| ||  ||||     
T  5087402 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgatggtgctagcaatatgagaggagaatggaattgtttacaagcactt 5087501  T
Q  357 attttgaatgaatgtccttatgcataccacattcattgttttgaacataagttgcaacctgcctt 421  Q
     || |||| || ||||||||||| ||| |  | ||||||||||  |||  |||||||| ||||||    
T  5087502 tttatgaaagattgtccttatgcttactatgtccattgttttgctcatcggttgcaacttgcctt 5087566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 399
Target Start/End: Original strand, 43524041 - 43524183
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||| | |||||||  |||| ||  || |     
T  43524041 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaagggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 43524140  T
Q  357 attttgaatgaatgtccttatgcataccacattcattgttttg 399  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  43524141 tttatgaaggattgtccttatgcatactacatccattgttttg 43524183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 43523802 - 43523978
Alignment:
Q  22 tcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatgga 121  Q
    |||| ||| ||||||| |||||   |||||||||| || ||||||||  ||||| || |||||||||||||||||||| ||||| ||  |||| |||| |    
T  43523802 tcaagttcaaaaagagctcttggcaattctttctagtagagtgaaaaaacatatccgtgaggaaattggtgattccaagttttgtatcattgtagatgaa 43523901  T
Q  122 gtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagagcg 198  Q
    | | | ||||   ||||||||||||| ||||||||||| || ||||||||||||||| | ||||| |||||||||||    
T  43523902 gctcgcgatgagtcacaaaaggaacaaatggctcttgtgttaagatttgttgataaagatggtttaatacaagagcg 43523978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 5087162 - 5087336
Alignment:
Q  22 tcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatgga 121  Q
    |||| ||| ||||||| | ||||| |||||||||| ||  |||  ||  |||||||| || |||||||||||||| ||||||||||| |||||||||| |    
T  5087162 tcaaattcaaaaagagcttttgcaaattctttctagtagggtgggaaaacatattcgtgaagaaattggtgattctaaattttgcatcgttgttgatgaa 5087261  T
Q  122 gtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagag 196  Q
    | | ||||||   || |||||||||| ||||||||||| || |||||||||||||||   ||||| |||||||||    
T  5087262 gctcgtgatgagtcaaaaaaggaacaaatggctcttgtgttaagatttgttgataaagctggtttgatacaagag 5087336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 23122644 - 23122468
Alignment:
Q  22 tcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatgga 121  Q
    |||| ||| ||||||| ||||| | |||||||||| || ||||||||  |||||||| |||||||||||||||||||| ||||| ||  |||| |||| |    
T  23122644 tcaagttcaaaaagagctcttggaaattctttctagtagagtgaaaaaacatattcgtgaggaaattggtgattccaagttttgtatcattgtagatgaa 23122545  T
Q  122 gtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagagcg 198  Q
    | | | ||||   ||||||||||||| |||||||| || || ||||||||||||||| | ||||| |||||||||||    
T  23122544 gctcgcgatgagtcacaaaaggaacaaatggctctggtgttaagatttgttgataaagatggtttaatacaagagcg 23122468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 22271733 - 22271611
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||| |||| ||  ||||     
T  22271733 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcactt 22271634  T
Q  357 attttgaatgaatgtccttatgc 379  Q
     || |||| || |||||||||||    
T  22271633 tttatgaaagattgtccttatgc 22271611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 399
Target Start/End: Complemental strand, 23122404 - 23122262
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||| | |||||||  |||| ||  || |     
T  23122404 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaagggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 23122305  T
Q  357 attttgaatgaatgtccttatgcataccacattcattgttttg 399  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  23122304 tttatgaaggattgtccttatgcatactacatccattgttttg 23122262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 14008046 - 14008222
Alignment:
Q  22 tcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatgga 121  Q
    |||| ||| ||||||| |||||   |||||||||| || ||||||||  ||||| || |||||||||||||||||||| ||||| ||  |||| |||| |    
T  14008046 tcaagttcaaaaagagctcttggcaattctttctagtagagtgaaaaaacatatccgtgaggaaattggtgattccaagttttgtatcattgtagatgaa 14008145  T
Q  122 gtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagagcg 198  Q
    | | | ||||   ||||||||||||| ||||||||||| || ||||||||||||||| | ||||| |||||||||||    
T  14008146 gctcgcgatgagtcacaaaaggaacaaatggctcttgtgttaagatttgttgataaagatggtttaatacaagagcg 14008222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 399
Target Start/End: Original strand, 14008286 - 14008428
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||| || ||| ||||||||| | |||||||  |||| ||  || |     
T  14008286 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaatggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 14008385  T
Q  357 attttgaatgaatgtccttatgcataccacattcattgttttg 399  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  14008386 tttatgaaggattgtccttatgcatactacatccattgttttg 14008428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 22271964 - 22271799
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| ||||| |||||||||| ||  |||| ||  |||||| | || |||||||||||||| |||||||| ||  | ||||||| || | |||||    
T  22271964 aaaagagatattgcaaattctttctagtagggtgagaaaacatatttgtgaagaaattggtgattctaaattttgtatcatcgttgatgaagctcgtgat 22271865  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagag 196  Q
    |   || |||||||||| ||||||||||| || || ||||||||||||   ||||| |||||||||    
T  22271864 gagtcaaaaaaggaacaaatggctcttgtgttaaggtttgttgataaagctggtttgatacaagag 22271799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 379
Target Start/End: Original strand, 31420673 - 31420795
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||| |||| ||  ||||     
T  31420673 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcactt 31420772  T
Q  357 attttgaatgaatgtccttatgc 379  Q
     || |||| || |||||||||||    
T  31420773 tttatgaaagattgtccttatgc 31420795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 399
Target Start/End: Original strand, 41595435 - 41595577
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||||||||||| || ||| ||||||||| | |||||||  |||| ||  || |     
T  41595435 tatactttctcgacataaccttgatgtttctaaccttcgtggtcaagggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 41595534  T
Q  357 attttgaatgaatgtccttatgcataccacattcattgttttg 399  Q
     || |||| || ||||||||||||||| |||| ||||||||||    
T  41595535 tttatgaaggattgtccttatgcatactacatccattgttttg 41595577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 198
Target Start/End: Original strand, 41595195 - 41595371
Alignment:
Q  22 tcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatgga 121  Q
    |||| ||| ||||||| |||||   |||||||||| || ||||||||  ||||| || |||||||||||||||||||| ||||| ||  |||| |||| |    
T  41595195 tcaagttcaaaaagagctcttggcaattctttctagtagagtgaaaaaacatatccgtgaggaaattggtgattccaagttttgtatcattgtagatgaa 41595294  T
Q  122 gtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagagcg 198  Q
    | | | ||||   ||||||||||||| ||||||||||| || ||||||||||||||| | ||||| |||||||||||    
T  41595295 gctcgcgatgagtcacaaaaggaacaaatggctcttgtgttaagatttgttgataaagatggtttaatacaagagcg 41595371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 31420442 - 31420607
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| || || |||||||||| ||  |||| ||  |||||||| || |||||||||||||| ||||||||||| || ||||||| || | |||||    
T  31420442 aaaagagatattacaaattctttctagtagggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagctcgtgat 31420541  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagag 196  Q
    |   || |||||||||| ||||||||||| || || ||||||||||||   ||||| |||||||||    
T  31420542 gagtcaaaaaaggaacaaatggctcttgtgttaaggtttgttgataaagctggtttgatacaagag 31420607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 379
Target Start/End: Original strand, 95976 - 96098
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||| |||| ||  ||||     
T  95976 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcactt 96075  T
Q  357 attttgaatgaatgtccttatgc 379  Q
     || |||| || |||||||||||    
T  96076 tttatgaaagattgtccttatgc 96098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 95812 - 95892
Alignment:
Q  98 aaattttgcatagttgttgatggagtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaa 178  Q
    ||||||||||| |||||||||| || | ||||||   || |||||||||| |||||| |||| || |||||||||||||||    
T  95812 aaattttgcatcgttgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctattgtgttaagatttgttgataaa 95892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 9303551 - 9303588
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattc 294  Q
    ||||||||||||||| || |||||||||||||||||||    
T  9303551 tatactttctcgacataaccttgatgtttctaacattc 9303588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 379
Target Start/End: Original strand, 2735304 - 2735426
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||| |||| ||  ||||     
T  2735304 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcactt 2735403  T
Q  357 attttgaatgaatgtccttatgc 379  Q
     || |||| || |||||||||||    
T  2735404 tttatgaaagattgtccttatgc 2735426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 257 - 379
Target Start/End: Original strand, 40924350 - 40924472
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||| |||| ||  ||||     
T  40924350 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcactt 40924449  T
Q  357 attttgaatgaatgtccttatgc 379  Q
     || |||| || |||||||||||    
T  40924450 tttatgaaagattgtccttatgc 40924472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 40924119 - 40924284
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| ||||| |||||||||| ||  |||| ||  |||||||| || |||||||||||||| ||||||||||| || ||||||| || |||||||    
T  40924119 aaaagagatattgcaaattctttctagtagggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagcttgtgat 40924218  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagag 196  Q
    |   || |||||||||| ||||||||||| || || ||||||||||||   ||||| |||||||||    
T  40924219 gagtcaaaaaaggaacaaatggctcttgtgttaaggtttgttgataaagctggtttgatacaagag 40924284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 379
Target Start/End: Complemental strand, 22127904 - 22127782
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    |||||||| |||||| ||  |||| |||||||||||| |||||||||||||||| || |||||| ||||||||| | |||||||| |||| ||  |||||    
T  22127904 tatactttttcgacataactttgacgtttctaacatttgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacta 22127805  T
Q  357 attttgaatgaatgtccttatgc 379  Q
     || |||| || |||||||||||    
T  22127804 tttatgaaagattgtccttatgc 22127782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 257 - 399
Target Start/End: Complemental strand, 22511007 - 22510865
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagtttgcagacacta 356  Q
    ||||||||||||||| || ||||||||||||||| ||| ||||||||||||| |||| || ||| ||||||||| | |||||||  |||| ||  || |     
T  22511007 tatactttctcgacataaccttgatgtttctaaccttcatggtcaagggtataatggtgcaagcaatatgagaggagaatggaacggtttacaagcattg 22510908  T
Q  357 attttgaatgaatgtccttatgcataccacattcattgttttg 399  Q
     || |||| ||  |||||||||||||| |||| ||||||||||    
T  22510907 tttatgaaggatcgtccttatgcatactacatccattgttttg 22510865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 2735073 - 2735238
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| ||||| |||||||||| ||  |||| ||  |||||||| || |||||||||||||| |||||||| || || ||||||| || | |||||    
T  2735073 aaaagagatattgcaaattctttctagtagggtgagaaaacatattcgtgaagaaattggtgattctaaattttgtatcgtcgttgatgaagctcgtgat 2735172  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagag 196  Q
    |   || ||||| |||| ||||||||||| || || ||||||||||||   ||||| |||||||||    
T  2735173 gagtcaaaaaagaaacaaatggctcttgtgttaaggtttgttgataaagctggtttgatacaagag 2735238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 22511134 - 22511071
Alignment:
Q  135 cacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagagcg 198  Q
    ||||||||||||| ||||||||||| || ||||||||||||||| | ||||| |||||||||||    
T  22511134 cacaaaaggaacaaatggctcttgtgttaagatttgttgataaagatggtttaatacaagagcg 22511071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 41175 - 41264
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttt 346  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||| ||||    
T  41175 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggttt 41264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 40944 - 41109
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| || || |||||||||| ||  |||| ||  |||||||| || |||||||||||||| ||||||||||| || ||||||| || |||||||    
T  40944 aaaagagatatttcaaattctttctagtagggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagcttgtgat 41043  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagag 196  Q
    |   || |||||||||| ||||||||||| || || ||||||||||||   ||||| |||||||||    
T  41044 gagtcaaaaaaggaacaaatggctcttgtgttaaggtttgttgataaagctggtttgatacaagag 41109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 257 - 346
Target Start/End: Complemental strand, 14798553 - 14798464
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttt 346  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||| ||||||||| | |||||||| ||||    
T  14798553 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggttt 14798464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 14798784 - 14798619
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| || || |||||||||| ||  |||| ||  |||||||| || |||||||||||||| ||||||||||| || ||||||| || | |||||    
T  14798784 aaaagagatattacaaattctttctagtagggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagctcgtgat 14798685  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttatacaagag 196  Q
    |   || |||||||||| ||||||||||| || || ||||||||||||   ||||| |||||||||    
T  14798684 gagtcaaaaaaggaacaaatggctcttgtgttaaggtttgttgataaagctggtttgatacaagag 14798619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 27132123 - 27132212
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttt 346  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||| || ||||||||| | |||||||| ||||    
T  27132123 tatactttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctggcaatatgagaggagaatggaatggttt 27132212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 27129722 - 27129868
Alignment:
Q  31 aaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatggagtttgtgat 130  Q
    ||||||||| ||||| |||||||||| ||  |||| ||  |||||||| || |||||||||||||| ||||||||||| |||||||||| || | |||||    
T  27129722 aaaagagatattgcaaattctttctagtagggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgttgttgatgaagctcgtgat 27129821  T
Q  131 ggaccacaaaaggaacacatggctcttgttttgagatttgttgataaa 178  Q
    |   || |||||||||| ||||||| ||| || || ||||||||||||    
T  27129822 gagtcaaaaaaggaacaaatggctcctgtgtt-aggtttgttgataaa 27129868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 11054110 - 11053942
Alignment:
Q  22 tcaatttcgaaaagagatcttgcatattctttctaataaagtgaaaagtcatattcgcgaggaaattggtgattccaaattttgcatagttgttgatgga 121  Q
    |||| ||| ||||||| ||||| | |||||||||| ||  |||| ||   ||||||| || |||||||||||||| ||||||||||| |||||||||| |    
T  11054110 tcaaattcaaaaagagctcttgtaaattctttctagtagggtgagaaaatatattcgtgaagaaattggtgattctaaattttgcatcgttgttgatgaa 11054011  T
Q  122 gtttgtgatggaccacaaaaggaacacatggctcttgttttgagatttgttgataaaaacggttttataca 192  Q
      |  |||||   || |||||||||| |||||||  || || |||||||||||||||   |||||||||||    
T  11054010 actcatgatgagtcaaaaaaggaacaaatggctc--gtgttaagatttgttgataaagctggttttataca 11053942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 346
Target Start/End: Original strand, 25535945 - 25536034
Alignment:
Q  257 tatactttctcgacacaatcttgatgtttctaacattcgtggtcaagggtatgatggcgctagcgatatgagagaacaatggaatagttt 346  Q
    |||||||||| |||| || |||||||||||||||| |||||| ||| ||||||| || | |||  ||||||||| | |||||||| ||||    
T  25535945 tatactttctagacataaccttgatgtttctaacaatcgtggccaatggtatgaaggtgttagtaatatgagaggagaatggaatggttt 25536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University