View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_high_6 (Length: 391)
Name: NF6466_high_6
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_high_6 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 17987634 - 17988007
Alignment:
| Q |
18 |
ctgaattcgcaagagctccctgagttctttgaggatcacatgaaagaatggatgactgagttcggaaaataccttactaatagttacccttttcttgagg |
117 |
Q |
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| T |
17987634 |
ctgaattcgcaagagctccctgagttctttgaggatcacatgaaagaatggatgactgagttcggaaaataccttactaatagttacccttttcttgagg |
17987733 |
T |
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| Q |
118 |
ggtgtggacctgatggtcttgctcttgtagacgaacttagggttgctgtttgtgagaatattaatctatatatggtaaagtatgaggaggagtttaaggg |
217 |
Q |
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| T |
17987734 |
ggtgtggacctgatggtcttgctcttgtagacgaacttagggttgctgtttgtgagaatattaatctatatatggtaaagtatgaggaggagtttaagga |
17987833 |
T |
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| Q |
218 |
attcttgagtggttttgcacatgatgtgtggagtttgttgagaaatgtatcacaatcgagtagtcgtgatcaacttgctgtcacggctatcaagtttttg |
317 |
Q |
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| T |
17987834 |
acacttgagtggttttgcacaagatgtgtggaatttgttaaggaacgtgtcacaatcgagtggtcgtgatcaacttgctgtcacggctatcaagttttta |
17987933 |
T |
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| Q |
318 |
accacggttagcaccagtgttgaccatgctttattcgctgctgatgcgactatactcctgatttgccaaggcat |
391 |
Q |
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| T |
17987934 |
accacagttagcacaagtgttcaccatgctttattcgctgctgatgcgactatactcctgatttgccaaggcat |
17988007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 9752874 - 9752553
Alignment:
| Q |
14 |
ttcactgaattcgcaagagctccctgagttctttgaggatcacatgaaagaatggatgactgagttcggaaaataccttactaatagttacccttttctt |
113 |
Q |
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| T |
9752874 |
ttcactgaattttcaagagttgcctgagttttttgaggatcatatgaatgaatggatgggtgaatttaggaaatatttgactactagttatccttctctt |
9752775 |
T |
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| Q |
114 |
gaggggtgtggacctgatggtcttgctcttgtagacgaacttagggttgctgtttgtgagaatattaatctatatatggtaaagtatgaggaggagttta |
213 |
Q |
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| T |
9752774 |
gaggggagtag---tgatggtcttgctcttgtggatgagcttcgggctgcggtttgtgagaatattaatctgtacatggagaagaatgaggaggagttta |
9752678 |
T |
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| Q |
214 |
agggattcttgagtggttttgcacatgatgtgtggagtttgttgagaaatgtatcacaatcgagtagtcgtgatcaacttgctgtcacggctatcaagtt |
313 |
Q |
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| T |
9752677 |
aggtttttttgaatgattttgcacttgctgtgtggactttgttagggaatgtgtcgcagtcgactagtcgtgaccagcttgcggttacggcgattaagtt |
9752578 |
T |
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| Q |
314 |
tttgaccacggttagcaccagtgtt |
338 |
Q |
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| T |
9752577 |
tttgacgacggttagtacgagtgtt |
9752553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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