View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_high_9 (Length: 324)
Name: NF6466_high_9
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 42472700 - 42472387
Alignment:
| Q |
1 |
tgaacataagttgcaacctgccttggtttgtgcatcgtcagaagtttttccaattcaacaattcttttcaaagttgacttctattgtcaattttttcaat |
100 |
Q |
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| T |
42472700 |
tgaacataagttgcaacctgccttggtttgtgcatcgtcagaagtttttccaattcaacaattcttttcaaagttgacttctattgtcaattttttcaat |
42472601 |
T |
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| Q |
101 |
tcttgtagtaagccccatgatgagtcgctagctgccaagttaaatgaaatcgcacatttgctagagatcagtgaaattggcgaaggggcaaatcaaattg |
200 |
Q |
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| T |
42472600 |
tcttgtagtaagccccatgatgagtcgctagctgccaagttaaatgaaatcgcacatttgctagagatcagtgaaattggcgaaggggcaaatcaaattg |
42472501 |
T |
|
| Q |
201 |
gtagtttacaaagagttggagatacttgtttgaggtcacatttttcttctatttgtagcttgataaggatgtacgatacaacttgtttgattcttaaaaa |
300 |
Q |
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| T |
42472500 |
gtagtttacaaagagttggagatacttgtttgaggtcacatttttcttctatttgtagcttgataaggatgtacgatacaacttgttcgattcttaaaaa |
42472401 |
T |
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| Q |
301 |
acttgctgatgatg |
314 |
Q |
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| T |
42472400 |
acttgctgatgatg |
42472387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 42479942 - 42479777
Alignment:
| Q |
5 |
cataagttgcaacctgccttggtttgtgcatcgtcagaagtttttccaattcaacaattcttttcaaagttgacttctattgtcaattttttcaattctt |
104 |
Q |
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| T |
42479942 |
cataagttgcaatctgccttggtttgtgcatcgtcagaagttactccaatttacctgttcttttctgaattgaattctattgtagattttttctcttgtt |
42479843 |
T |
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| Q |
105 |
gtagtaagccccatgatgagtcgctagctgccaagttaaatgaaatcgcacatttgctagagatca |
170 |
Q |
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| T |
42479842 |
gtagtaagccccatgatgagttacttgctgccaagttagatgaaattgcacatttgctaaagatca |
42479777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 96332 - 96408
Alignment:
| Q |
210 |
aaagagttggagatacttgtttgaggtcacatttttcttctatttgtagcttgataaggatgtacgatacaacttgt |
286 |
Q |
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| T |
96332 |
aaagagctggagatactcgttggggatcacatttcaattctatttgtagcttgataagtatgtatgaagcaacttgt |
96408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 286
Target Start/End: Original strand, 5087757 - 5087833
Alignment:
| Q |
210 |
aaagagttggagatacttgtttgaggtcacatttttcttctatttgtagcttgataaggatgtacgatacaacttgt |
286 |
Q |
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|||||| |||||||||| ||| | | |||||||| ||||||||||||||||||||| ||||| || |||||||| |
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| T |
5087757 |
aaagagctggagatactcgttggggatcacatttcaattctatttgtagcttgataagtatgtatgaagcaacttgt |
5087833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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