View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_low_1 (Length: 763)
Name: NF6466_low_1
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 1 - 747
Target Start/End: Complemental strand, 38569586 - 38568838
Alignment:
| Q |
1 |
ctggtgttttgacatgtaatccactgagaaggtttgtcaaccacatgacctctactgtagcatttgctactgaacgatattcagcttccggtgatgatcg |
100 |
Q |
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| T |
38569586 |
ctggtgttttgacatgtaatccactgagaaggtttgtcaaccacatgacctctgctgcagcatttgctactgaatgatattcagcttccggtgatgatcg |
38569487 |
T |
|
| Q |
101 |
tgccacagttctctgtctcttggatagccacaacactgaattacctccaaaataaattacctccacgacact-gaa------tcatctaagtagtctccc |
193 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | | | ||| |||||||||||||||||| |
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| T |
38569486 |
tgccacagttctctgtctcttggatagccacgacactgaattacctccaaaataaattacaaacgttaaggtagaagtgtgatcatctaagtagtctccc |
38569387 |
T |
|
| Q |
194 |
caatctgcatcactaaaggcatgtaatttcatatgagccggtttcttaagtttcaagccataattgaaggggagtttgagatattgaatgactcgtttaa |
293 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38569386 |
caatttgcatcactaaaggcatgtaatttcatatgagccggtttcttaagtttcaagccataattgaaggggagtttgagatattgaatgactcgtttaa |
38569287 |
T |
|
| Q |
294 |
gttgccgaaaatggatctgtgtgggctggtgcatgaattgtgacagtttattgatggaaaatgagaggtctggacaagtcaaggtgttgtatcgcaaagt |
393 |
Q |
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| T |
38569286 |
gttgctgaaaagggatctgtgtgggctggtgcatgaattgtgacagtttattgatggaaaatgagaggtctggacgagtcaaggtgttgtatcgcaaagt |
38569187 |
T |
|
| Q |
394 |
tccaataatgttgcaaaacattttggaatcagcttgtgtagatccgaccactagttgaggggggatggaattgcaaggaggagtgtgagtgggttttgct |
493 |
Q |
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| T |
38569186 |
tccaataatgttgcgaaacattttggaatcagcttgtgtagatccgaccactagttgaggggggatggaattgcaaagaggagtgtgagtgggttttgct |
38569087 |
T |
|
| Q |
494 |
cctgccatgtcaaatgctagtaaaaagtttctgatatgtccatgttgagcgagaatcaaaccatcagaggtagggataagttcaacaccaaggaagtaat |
593 |
Q |
| |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38569086 |
-----catgtcaaatggttgtaaaaagtttctgatatgtccatgttgagcgagaatcaaaccatcagaggtagggataagttcaacaccaaggaagtaat |
38568992 |
T |
|
| Q |
594 |
gtggataaccaagatacttgattgaaaattgatttgacagttccttcataaatgatttgagaattattggaacacttcctgtgagaatcaagtcatcaac |
693 |
Q |
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| T |
38568991 |
gtggataaccaagatacttgattgaaaattgatttgacagtttcttcataaatgatttgagaattattggaacacttcctgtgagaatcaagtcatcaac |
38568892 |
T |
|
| Q |
694 |
atatactagcaagaaagcttgtattccttcttttttgtagatgaacaaggaaga |
747 |
Q |
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| T |
38568891 |
atatactagcaagaaagcttgtattccttcttttttgtagatgaacaaggaaga |
38568838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 744
Target Start/End: Complemental strand, 31346905 - 31346847
Alignment:
| Q |
686 |
tcatcaacatatactagcaagaaagcttgtattccttcttttttgtagatgaacaagga |
744 |
Q |
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||||||||||| ||||||||||| ||||| | |||||| | ||||||||||||||||| |
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| T |
31346905 |
tcatcaacataaactagcaagaatgcttgcaccccttctctattgtagatgaacaagga |
31346847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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