View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_low_11 (Length: 322)
Name: NF6466_low_11
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 9658566 - 9658276
Alignment:
| Q |
18 |
acaattggtgctggtgtatatgttctagttggaacagtggcaagggaacatgctggaccagctttacctctttcatttatggttgctggaatagcagcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
9658566 |
acaattggtgctggtgtatatgttctagttggaacagtggcaagggaacatgctggaccagctttaccactttcattcatggttgctggtatagcagcag |
9658467 |
T |
|
| Q |
118 |
cactttcagctctttgttatgctgagttagccagtcgttttccttctgctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtata |
217 |
Q |
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| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| |
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| T |
9658466 |
ctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttatcattatgcttatatatgtcttggtgaagggtatttata |
9658367 |
T |
|
| Q |
218 |
tattcaccttattgacattcttaatttcttacattacataaattagaatctatattgttttagacggtctgatctggatcggatgagtacc |
308 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9658366 |
cattcaccttctttacattcttaatttcttacattacataaattagaatctatattgttttagacggtctgatctggatcagatgagtacc |
9658276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 9641667 - 9641428
Alignment:
| Q |
18 |
acaattggtgctggtgtatatgttctagttggaacagtggcaagggaacatgctggaccagctttacctctttcatttatggttgctggaatagcagcag |
117 |
Q |
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||||||||||||||||| |||||| | |||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
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| T |
9641667 |
acaattggtgctggtgtgtatgttttggttggaactgtagcaagggaacatgctggaccagctttaccattttcattcatggttgctggtatagcagcag |
9641568 |
T |
|
| Q |
118 |
cactttcagctctttgttatgctgagttagccagtcgttttccttctgctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtata |
217 |
Q |
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| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9641567 |
ctctttcagctctttgttatgctgagttggctagtcgttttccttctgctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatttata |
9641468 |
T |
|
| Q |
218 |
tattcaccttattgacattcttaatttcttacattacata |
257 |
Q |
| |
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||||||||| || |||||||||| ||||||||||||||| |
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| T |
9641467 |
cattcaccttctttacattcttaaattcttacattacata |
9641428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 9618416 - 9618207
Alignment:
| Q |
18 |
acaattggtgctggtgtatatgttctagttggaacagtggcaagggaacatgctggaccagctttacctctttcatttatggttgctggaatagcagcag |
117 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |
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| T |
9618416 |
acaataggtgctggtgtatacgttctagttggaacagtggcaagggaacatgctggaccagcattaccactttcattcatggtagctggaatagcagcag |
9618317 |
T |
|
| Q |
118 |
cactttcagctctttgttatgctgagttagccagtcgttttccttctgctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtata |
217 |
Q |
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| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
9618316 |
ctctttcagctctttgttatgctgagttggccagtcgttttccttctgctggaagtgcttatcattatgcttacatatgtcttggtgaagggtatttata |
9618217 |
T |
|
| Q |
218 |
tattcacctt |
227 |
Q |
| |
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||||||||| |
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| T |
9618216 |
cattcacctt |
9618207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 9633142 - 9632920
Alignment:
| Q |
18 |
acaattggtgctggtgtatatgttctagttggaacagtggcaagggaacatgctggaccagctttacctctttcatttatggttgctggaatagcagcag |
117 |
Q |
| |
|
||||| |||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | |
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| T |
9633142 |
acaataggtgctggcctgtatgttttggttggaacagtggcaagggaacatgctggaccagctttaccactttcattcatggttgctggtatagcagctg |
9633043 |
T |
|
| Q |
118 |
cactttcagctctttgttatgctgagttagccagtcgttttccttctgctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtata |
217 |
Q |
| |
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| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
9633042 |
ctatttcagctctttgctatgctgagttggctagtcgttttccttctgctggaagtgcttatcattatgcttacatatgtcttggtgaagggtatttata |
9632943 |
T |
|
| Q |
218 |
tattcaccttattgacattctta |
240 |
Q |
| |
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|||| |||| || | ||||||| |
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| T |
9632942 |
cattctccttctttagattctta |
9632920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 33641576 - 33641769
Alignment:
| Q |
18 |
acaattggtgctggtgtatatgttctagttggaacagtggcaagggaacatgctggaccagctttacctctttcatttatggttgctggaatagcagcag |
117 |
Q |
| |
|
|||||||||||||| || |||||| | ||||||||||| || || || ||| ||||||| ||||| || |||| ||| || ||||||| ||||||| | |
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| T |
33641576 |
acaattggtgctggagtctatgttttggttggaacagtagctagagagcattctggaccggctttggctatttcttttctgattgctgggttagcagctg |
33641675 |
T |
|
| Q |
118 |
cactttcagctctttgttatgctgagttagccagtcgttttccttctgctggaagtgcttatcactatgcttacatatgtcttggtgaagggta |
211 |
Q |
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|||||||| |||||||||| |||||||| || | | ||||||||||| ||||| ||||||||| | |||||||||||||| |||||||| |
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| T |
33641676 |
gtctttcagccttttgttatgcagagttagcttgtagatgcccttctgctgggagtgcatatcactattcatacatatgtcttggagaagggta |
33641769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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