View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_low_18 (Length: 246)
Name: NF6466_low_18
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_low_18 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 3845230 - 3845001
Alignment:
| Q |
18 |
gaaatgtcttgctggtaaccattgaaggtgttgaagcaggagatctgagcattgatgttatccatttggtaagtgatactgcgttgctagttgatttgga |
117 |
Q |
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| T |
3845230 |
gaaatgtcttgctggtaaccattgaaggtgttgaagcaggagatgtgagcattgatgttatccacttggtaagtgatactgagttgctagttgatttgga |
3845131 |
T |
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| Q |
118 |
tttctgtgtgatgttggtaggcgccttgtttgggtgaactgtgggatgtacaaacttatt-ttttctagtgtataatagctgacttctggtagaatcaat |
216 |
Q |
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| T |
3845130 |
tttctgtgtgatgttggtaggcgccttgtttgggtgaactgtgtgatgtacaaacttatttttttctagtgtataatagctgacttctggtagaatcaat |
3845031 |
T |
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| Q |
217 |
acatttctttgttctttactcagttgtttt |
246 |
Q |
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| T |
3845030 |
acatttctttgttctttactcaggtgtttt |
3845001 |
T |
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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 2884553 - 2884479
Alignment:
| Q |
18 |
gaaatgtcttgctggtaaccattgaaggtgttgaagcaggagatctgagcattgatgttatccatttggtaagtg |
92 |
Q |
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||||||||||||||||||| |||||||| |||||||| || ||| ||||||||||||||||||| ||||||||| |
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| T |
2884553 |
gaaatgtcttgctggtaactattgaaggcgttgaagctggggatgtgagcattgatgttatccacctggtaagtg |
2884479 |
T |
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