View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_low_2 (Length: 526)
Name: NF6466_low_2
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_low_2 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 4393578 - 4393049
Alignment:
| Q |
1 |
ttgattctgattctggttctggttctgattcttgttctggttttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4393578 |
ttgattctgattctggttctggttctgattcttgttctggttttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaa |
4393479 |
T |
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| Q |
101 |
acattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattcaccattccagaattgaagatagctt |
200 |
Q |
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| T |
4393478 |
acattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattcaccattccagaattgaagatagctt |
4393379 |
T |
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| Q |
201 |
caagtatgcggatttgttctggttttggattccaccttggctttggctcaggacttctctcttcacaacctatttccataaagaaagaagaagnnnnnnn |
300 |
Q |
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| T |
4393378 |
caagtatgcggatttgttctggttttggattccaccttggctttggctcaggacttctctcttcacaacctatttccataaagaaagaagaa-aacaaaa |
4393280 |
T |
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| Q |
301 |
tatcaataataacttgttacaaatcagacattagaatctctgaactatagtcaaatattagt------------caaatgtagatatttacctgaggagt |
388 |
Q |
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| T |
4393279 |
tatcaataataacttgttacaaatcagacattagaatctctgaactatagtcaaatattagtatatttagattgaaaatgtagatatttacctgaggagt |
4393180 |
T |
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| Q |
389 |
aaggggttctgtggcaagcagaagagatgagagaagagttgatgtcatgctgccattggtgatgagtgttgcagggcttagacttaaacatgcttggcca |
488 |
Q |
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| T |
4393179 |
aaggggttctgtggcaagcagaagagatgagagaagagttgatgtcatgctgccattggtgatgagtgttgcagggcttagacttaaacatgcttggcca |
4393080 |
T |
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| Q |
489 |
gtgtctatttgatgaagccatgatgatgatg |
519 |
Q |
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| T |
4393079 |
gtgtctatttgatgaagccatgatgatgatg |
4393049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 77 - 264
Target Start/End: Complemental strand, 8284525 - 8284338
Alignment:
| Q |
77 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattca |
176 |
Q |
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| T |
8284525 |
ttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaattgttcacgtatcttcgtaatttcctcccttggtgggttca |
8284426 |
T |
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| Q |
177 |
ccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttggctcaggacttctctcttc |
264 |
Q |
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| T |
8284425 |
ccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctctcttc |
8284338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 33813272 - 33813189
Alignment:
| Q |
156 |
tttcttctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttg |
239 |
Q |
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| T |
33813272 |
tttcttcttttgggggattcaccatgccactgttgaagatggactcaagtatgagaatttgttctggttttggtgtccaccttg |
33813189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 5751 - 5667
Alignment:
| Q |
161 |
tctcttggtggattcaccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttg |
245 |
Q |
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| T |
5751 |
tctctttgtggattcaccatccctgagttgaagaggacttcgagaatgcggatttgctcaagctttggattccatcttggctttg |
5667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 265
Target Start/End: Complemental strand, 34686667 - 34686479
Alignment:
| Q |
77 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattca |
176 |
Q |
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| T |
34686667 |
ttgcggttttgaaaccagtaaaagacactcgcatcaccaatttgtccaaattcttgtaattgttctcgtatcttcttgatttcatctacaggtggattct |
34686568 |
T |
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| Q |
177 |
ccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttggctcaggacttctctcttca |
265 |
Q |
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| T |
34686567 |
tcatccctgagttgtagatggcttcaagaatgcggatttgctcaggctttggaatccatcttggccttggtccaggatttctatcttca |
34686479 |
T |
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