View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_low_20 (Length: 233)
Name: NF6466_low_20
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 32266260 - 32266463
Alignment:
| Q |
17 |
gtttcttcacactgttttcactcatgtttatagatttatatgaaatatttgttttataaaaattgttccctgtattgaaagtcttaaagctttccttctg |
116 |
Q |
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| T |
32266260 |
gtttcttcacactgttttcactcatgtttatagatttatatgaaagatttgttttataaaaattgttccctgtattgaaagtcttaaagctttccttctg |
32266359 |
T |
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| Q |
117 |
tttgggaaattgtcttattaagaccaattttgttttgaattaggataactaagcaatgaaaagacataatttcttatatgaatagaagaaacatgttgca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266360 |
tttgggaaattgtcttattaagaccaattttgttttgaattaggataactaagcaatgaaaagacataatttcttatatgaatagaagaaacatgttgca |
32266459 |
T |
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| Q |
217 |
attg |
220 |
Q |
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|||| |
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| T |
32266460 |
attg |
32266463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 32257442 - 32257501
Alignment:
| Q |
17 |
gtttcttcac-actgttttcactcatgtttatagatttatatgaaatatttgttttataa |
75 |
Q |
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|||||||||| |||||||| |||||| ||||| |||||||||||||||||| |||||||| |
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| T |
32257442 |
gtttcttcaccactgtttttactcatttttatcgatttatatgaaatattttttttataa |
32257501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Original strand, 32257551 - 32257598
Alignment:
| Q |
114 |
ctgtttgggaaattgtcttattaagaccaattttgttttgaattagga |
161 |
Q |
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| T |
32257551 |
ctgtttgcaaaattgtcttattacgaccaattttgttttgaattagga |
32257598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 32257869 - 32257912
Alignment:
| Q |
155 |
attaggataactaagcaatgaaaagacataatttcttatatgaa |
198 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
32257869 |
attaggagaactaagcaatgaaaaaacataatttcttatatgaa |
32257912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33179365 - 33179414
Alignment:
| Q |
17 |
gtttcttcacactgttttcactcatgtttataga-tttatatgaaatatt |
65 |
Q |
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||||||||||||||||||||||||| ||||| | ||||||||||||||| |
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| T |
33179365 |
gtttcttcacactgttttcactcatcattatatattttatatgaaatatt |
33179414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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