View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_low_3 (Length: 496)
Name: NF6466_low_3
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_low_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 6592961 - 6593201
Alignment:
| Q |
8 |
gacatcatcacgatcttcataagcatcatagaatcgtactagattcttatgtccattcaaagctctcaatattttcacttcccttctcacatcctcaata |
107 |
Q |
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| T |
6592961 |
gacattatcacgatcttcataagcatcatagaatcgtactagattcttatgtccattcaaagctctcaatattttcacttcccttctcacatcctcaata |
6593060 |
T |
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| Q |
108 |
gcaatagcagatgtcatctacaattaaaagataaaagttaaaacacaattgccctatttggatgaacagtttaagcataagcgcgtatcatataagtact |
207 |
Q |
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| T |
6593061 |
gcaatagcagatgtcatctacaattaaaagataaaagttaaaacacaattgccctatttagatgaacagtttaagcataagcgcgtatcatataagtact |
6593160 |
T |
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| Q |
208 |
tatgtatacgatatgaccctgtttggataaacaacttaatt |
248 |
Q |
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| T |
6593161 |
tatgtatacgatatgaccctgtttggataaacaacttaatt |
6593201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 300 - 479
Target Start/End: Complemental strand, 42169572 - 42169384
Alignment:
| Q |
300 |
tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtagtattaattaccaacaaataa |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42169572 |
tctcataaacggttataaaagtgcttatgtcactagataagcttgaataagtgaattcaaaaatgaaatttggaaagtaatattaattaccaacaaataa |
42169473 |
T |
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| Q |
400 |
t--------gtgtagccatggatta-ttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc |
479 |
Q |
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| T |
42169472 |
tcagagttagtgtagccatggattatttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc |
42169384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 42169733 - 42169655
Alignment:
| Q |
224 |
ccctgtttggataaacaacttaattagcctcatagcataaggacttatcatgatattcacttatctataagttatttct |
302 |
Q |
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| T |
42169733 |
ccctgtttggataaacaacttaattagcctcatagcataaggactcatcatgatattcacttatctataagttatttct |
42169655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 34200948 - 34200824
Alignment:
| Q |
8 |
gacatcatcacgatcttcataagcatcatagaatcgtactagattcttatgtccattcaaagctctcaatattttcacttcccttctcacatcctcaata |
107 |
Q |
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| T |
34200948 |
gacattatcatgatcttcataagcctcataaaatttaatcaaattcttgtgtccattcaaagctctcaagatcttcacttcccttctaacatcctcaata |
34200849 |
T |
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| Q |
108 |
gcaatagcagatgtcatctacaatt |
132 |
Q |
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| T |
34200848 |
gcaatagcagtagtcatctacaatt |
34200824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 14929332 - 14929300
Alignment:
| Q |
183 |
cataagcgcgtatcatataagtacttatgtata |
215 |
Q |
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| T |
14929332 |
cataagcgcttatcatataagtacttatgtata |
14929300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 465
Target Start/End: Original strand, 7725551 - 7725600
Alignment:
| Q |
416 |
attattacctatggtgagtttcagctatacccatcatagtaagataatgg |
465 |
Q |
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| T |
7725551 |
attattacctatggtgagtttcagctatatcagtcacagtaagataatgg |
7725600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 25507241 - 25507269
Alignment:
| Q |
221 |
tgaccctgtttggataaacaacttaatta |
249 |
Q |
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| T |
25507241 |
tgaccctgtttggataaacaacttaatta |
25507269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 333947 - 333898
Alignment:
| Q |
430 |
tgagtttcagctatacccatcatagtaagataatggctgaaagcacgagc |
479 |
Q |
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| T |
333947 |
tgagtttcagctatgctcatcatagtaagatagtgactgaatgcacgagc |
333898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 10285257 - 10285285
Alignment:
| Q |
219 |
tatgaccctgtttggataaacaacttaat |
247 |
Q |
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| T |
10285257 |
tatgaccctgtttggataaacaacttaat |
10285285 |
T |
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