View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6466_low_4 (Length: 444)

Name: NF6466_low_4
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6466_low_4
NF6466_low_4
[»] chr4 (12 HSPs)
chr4 (9-203)||(30274628-30274820)
chr4 (292-405)||(30274493-30274606)
chr4 (8-85)||(16714320-16714397)
chr4 (16-65)||(17339455-17339504)
chr4 (16-69)||(18554309-18554362)
chr4 (131-188)||(29910616-29910674)
chr4 (393-427)||(30273673-30273707)
chr4 (16-65)||(12138448-12138497)
chr4 (16-65)||(13268496-13268545)
chr4 (109-166)||(24970808-24970865)
chr4 (131-164)||(36491055-36491088)
chr4 (112-199)||(53933496-53933582)
[»] chr8 (3 HSPs)
chr8 (109-199)||(19735722-19735813)
chr8 (109-170)||(32549704-32549765)
chr8 (113-162)||(17855848-17855897)
[»] chr5 (7 HSPs)
chr5 (109-199)||(7212317-7212408)
chr5 (109-171)||(34255237-34255299)
chr5 (16-65)||(14138418-14138467)
chr5 (96-198)||(26636807-26636910)
chr5 (109-199)||(34255175-34255266)
chr5 (109-170)||(6167951-6168012)
chr5 (108-160)||(21022983-21023035)
[»] chr7 (3 HSPs)
chr7 (109-199)||(34877680-34877771)
chr7 (97-163)||(6622556-6622623)
chr7 (109-199)||(29235821-29235912)
[»] scaffold0168 (1 HSPs)
scaffold0168 (109-150)||(9702-9743)
[»] chr6 (3 HSPs)
chr6 (16-69)||(19544733-19544786)
chr6 (108-162)||(26391829-26391884)
chr6 (109-150)||(6087177-6087218)
[»] chr3 (3 HSPs)
chr3 (131-170)||(19996070-19996109)
chr3 (132-199)||(32711247-32711315)
chr3 (108-199)||(33700194-33700286)
[»] chr2 (2 HSPs)
chr2 (109-163)||(15577641-15577695)
chr2 (16-73)||(24788976-24789034)
[»] scaffold0290 (1 HSPs)
scaffold0290 (16-65)||(11664-11713)
[»] chr1 (2 HSPs)
chr1 (109-150)||(26090228-26090269)
chr1 (122-162)||(12018498-12018538)
[»] scaffold0094 (1 HSPs)
scaffold0094 (16-72)||(2086-2142)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 30274820 - 30274628
Alignment:
Q  9 catcatcataataataaccaatacttcacctattaaacctcattgaattaattaaaataaaaaataagtgtgttacaacatacaccaatactccctcaac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  30274820 catcatcataataataaccaatacttcacctattaaacctcattgaattaattaaaatagaaaataagtgtgttacaacatacaccgatactccctcaac 30274721  T
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatatatataggctaaatgcatcacttatttaatggatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |  || |||||||| |||||| ||||||||||||||||||||    
T  30274720 cacatttataaataacttttgcttttttagattcattgaatatttgatatattt--aaaatatatagcctaaatacatcacttatttaatggatt 30274628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 292 - 405
Target Start/End: Complemental strand, 30274606 - 30274493
Alignment:
Q  292 aaatgttgcaaactttttcgatcatgatccctaatgcaaaaatatcagtttattgtccccaatgccaatactggtgtgatttaattcattaaaaatctta 391  Q
    ||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30274606 aaatgttgcaaacttttccaatcatgacccctaatgcaaaaatatcagtttattgtccccaatgacaatactgatgtgatttaattcattaaaaatctta 30274507  T
Q  392 atacatttagcctt 405  Q
    ||||||||||||||    
T  30274506 atacatttagcctt 30274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 16714320 - 16714397
Alignment:
Q  8 acatcatcataataataaccaatacttcacctattaaacctcattgaattaattaaaataaaaaataagtgtgttaca 85  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||| | |||||| | ||||||||    
T  16714320 acatcatcataataattaccaatacttcacatattaaacctcattgaatcaattaaaaaataaaataggggtgttaca 16714397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 17339455 - 17339504
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaa 65  Q
    |||||| ||| ||| |||||||||||||||| ||||||||||||||||||    
T  17339455 ataatattaatcaaaacttcacctattaaacatcattgaattaattaaaa 17339504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 18554362 - 18554309
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaataaa 69  Q
    |||||| ||||||| |||||||||||||||  |||| |||||||||||||||||    
T  18554362 ataatattaaccaacacttcacctattaaaattcatggaattaattaaaataaa 18554309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 29910674 - 29910616
Alignment:
Q  131 ttttttagattcattgaatatttgatgtatctagaatata-tataggctaaatgcatca 188  Q
    ||||||||||| |||||||| ||||||||||||| ||||| ||||||  ||||||||||    
T  29910674 ttttttagatttattgaataattgatgtatctagtatatattataggtcaaatgcatca 29910616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 427
Target Start/End: Complemental strand, 30273707 - 30273673
Alignment:
Q  393 tacatttagccttactttaaatataattcataaaa 427  Q
    |||||||||||||| ||||||||||||||||||||    
T  30273707 tacatttagccttagtttaaatataattcataaaa 30273673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 12138448 - 12138497
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaa 65  Q
    |||||| ||| ||| |||||||||||||||  ||||||||||||||||||    
T  12138448 ataatattaatcaaaacttcacctattaaatatcattgaattaattaaaa 12138497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 13268496 - 13268545
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaa 65  Q
    |||||| ||||||| |||||||||||||||  |||| |||||||||||||    
T  13268496 ataatactaaccaacacttcacctattaaaattcatggaattaattaaaa 13268545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 24970808 - 24970865
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaa 166  Q
    |||||||||||| ||||||| |||||| ||||||||| ||||  ||| ||||||||||    
T  24970808 cacatttataaacaacttttactttttcagattcattaaataagtgacgtatctagaa 24970865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Original strand, 36491055 - 36491088
Alignment:
Q  131 ttttttagattcattgaatatttgatgtatctag 164  Q
    ||||||| ||||||||||||||||||||||||||    
T  36491055 ttttttacattcattgaatatttgatgtatctag 36491088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 53933496 - 53933582
Alignment:
Q  112 atttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatata-tataggctaaatgcatcacttatttaatg 199  Q
    |||||| ||||||||||  ||||||| |||  || |||| ||||||||| |  |||||| ||||| |||||||||||||||||||||||    
T  53933496 atttatgaataactttt--ttttttaaatttgttaaataattgatgtatttgtaatataatatagtctaaatgcatcacttatttaatg 53933582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 19735722 - 19735813
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatata-tataggctaaatgcatcacttatttaatg 199  Q
    |||||||||||  |||||||||||||||||||||||| || | ||||||||||| |||| || ||||| ||  || ||||||||||||||||    
T  19735722 cacatttataagcaacttttgcttttttagattcattaaacaattgatgtatctggaatgtactatagtcttgatacatcacttatttaatg 19735813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 32549704 - 32549765
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatata 170  Q
    ||||||||||   |||||||||||||||||||||||| ||||  |||||||||| |||||||    
T  32549704 cacatttatacgcaacttttgcttttttagattcattaaataactgatgtatctggaatata 32549765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 17855848 - 17855897
Alignment:
Q  113 tttataaataacttttgcttttttagattcattgaatatttgatgtatct 162  Q
    |||||||| |||||||| ||||| ||||||||| |||| |||||||||||    
T  17855848 tttataaacaacttttgttttttcagattcattaaataattgatgtatct 17855897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 7212408 - 7212317
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatat-atataggctaaatgcatcacttatttaatg 199  Q
    |||||||||||| |||||||  ||||||||||||||| |||| |||||||||||| || || |||||  ||| || ||||||||||||||||    
T  7212408 cacatttataaacaacttttatttttttagattcattaaataattgatgtatctaaaacataatataatctagatacatcacttatttaatg 7212317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 34255299 - 34255237
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatatat 171  Q
    |||||||||||  ||||||| |||||||||||||||| ||||  ||||||||||||| |||||    
T  34255299 cacatttataagcaacttttacttttttagattcattaaataagtgatgtatctagactatat 34255237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 14138418 - 14138467
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaa 65  Q
    |||||| ||| ||| |||||||||||||||| ||||||||||||||||||    
T  14138418 ataatattaatcaaaacttcacctattaaacatcattgaattaattaaaa 14138467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 26636807 - 26636910
Alignment:
Q  96 atactccctcaaccacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatat-atataggctaaatgcatcacttatt 194  Q
    ||||||||||   |||||||||||  ||||||| |||||| ||||||||| ||||  ||||||||||| || || ||||||  || || |||||||||||    
T  26636807 atactccctctgtcacatttataagcaacttttactttttcagattcattaaataaatgatgtatctaaaacataatatagtttagatacatcacttatt 26636906  T
Q  195 taat 198  Q
    ||||    
T  26636907 taat 26636910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 34255175 - 34255266
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatat-atataggctaaatgcatcacttatttaatg 199  Q
    ||||| |||||  ||||||||||||||||| |||||| |||   |||| ||||| |||||| |||||| ||| || ||||||||||||||||    
T  34255175 cacatatataagcaacttttgcttttttaggttcattaaatcactgatatatctggaatataatatagtctagatacatcacttatttaatg 34255266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 6168012 - 6167951
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatata 170  Q
    |||||||||||| ||||||||||||  || ||||||| ||||   |||||||||||||||||    
T  6168012 cacatttataaacaacttttgctttaatatattcattaaataaccgatgtatctagaatata 6167951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 21023035 - 21022983
Alignment:
Q  108 ccacatttataaataacttttgcttttttagattcattgaatatttgatgtat 160  Q
    ||||||||||||  || ||||  |||||||||||||||||||| |||||||||    
T  21023035 ccacatttataagcaaattttatttttttagattcattgaatagttgatgtat 21022983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 34877680 - 34877771
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatata-tataggctaaatgcatcacttatttaatg 199  Q
    |||||||||||  |||||||||| |||||| |||||| || | || |||||||| |||| || ||||| ||| |||||||||||||||||||    
T  34877680 cacatttataagcaacttttgctcttttaggttcattaaacaattaatgtatctggaatgtattatagtctagatgcatcacttatttaatg 34877771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 6622556 - 6622623
Alignment:
Q  97 tactccctc-aaccacatttataaataacttttgcttttttagattcattgaatatttgatgtatcta 163  Q
    ||||||||| || |||||||||||| ||||||| |||||||||||| | | |||| ||||||||||||    
T  6622556 tactccctccaatcacatttataaacaacttttacttttttagatttaataaataattgatgtatcta 6622623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 29235821 - 29235912
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatat-atataggctaaatgcatcacttatttaatg 199  Q
    ||||||||||||||| |||| |||||||||||||||| ||||  | ||||||||| || || |||||| ||| ||  || ||||||||||||    
T  29235821 cacatttataaataatttttacttttttagattcattaaataagttatgtatctaaaacataatatagtctagatatattacttatttaatg 29235912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 9743 - 9702
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaata 150  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  9743 cacatttataattaacttttgcttttttagattcattaaata 9702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 19544786 - 19544733
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaataaa 69  Q
    |||||| ||||||| |||||||||||||||  |||| |||||||||||||||||    
T  19544786 ataatattaaccaacacttcacctattaaaattcatggaattaattaaaataaa 19544733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 26391829 - 26391884
Alignment:
Q  108 ccacatttataaataacttttgctttt-ttagattcattgaatatttgatgtatct 162  Q
    |||||||||||| ||| |||| ||||| |||||||||||||||| |||||||||||    
T  26391829 ccacatttataagtaaattttactttttttagattcattgaatagttgatgtatct 26391884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 6087177 - 6087218
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaata 150  Q
    |||||||||||| |||| || |||||||||||||||||||||    
T  6087177 cacatttataaacaactatttcttttttagattcattgaata 6087218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 19996070 - 19996109
Alignment:
Q  131 ttttttagattcattgaatatttgatgtatctagaatata 170  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  19996070 ttttttagattcattgaataattgatgtatctagattata 19996109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 32711315 - 32711247
Alignment:
Q  132 tttttagattcattgaatatttgatgtatctagaatat-atataggctaaatgcatcacttatttaatg 199  Q
    ||||||||||||||||||| ||||||||||| |  ||| |||||||| |||| ||||| ||||| ||||    
T  32711315 tttttagattcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatg 32711247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 33700194 - 33700286
Alignment:
Q  108 ccacatttataaataacttttgcttttttagattcattgaatatttgatgtatctagaatat-atataggctaaatgcatcacttatttaatg 199  Q
    |||||| |||||  || ||||| ||||||||||||||| |||| | |||||||||  ||||| |||||| |||||| ||| | ||||||||||    
T  33700194 ccacatgtataagcaatttttgtttttttagattcattaaataatggatgtatctgaaatataatatagtctaaatacattatttatttaatg 33700286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 15577695 - 15577641
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaatatttgatgtatcta 163  Q
    |||||||||||| ||||||| |||||||| ||||||| ||||  |||||||||||    
T  15577695 cacatttataaacaacttttacttttttaaattcattaaataactgatgtatcta 15577641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 24788976 - 24789034
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaatt-aaaataaaaaat 73  Q
    |||||| ||| ||| ||| |||||||||||| |||||||||||||| ||||||||||||    
T  24788976 ataatattaatcaaaactccacctattaaacatcattgaattaattaaaaataaaaaat 24789034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 11713 - 11664
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaa 65  Q
    |||||| ||||||| |||||||||||||||  |||| |||||||||||||    
T  11713 ataatattaaccaacacttcacctattaaaattcatggaattaattaaaa 11664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 26090228 - 26090269
Alignment:
Q  109 cacatttataaataacttttgcttttttagattcattgaata 150  Q
    |||||||||||| ||||||||| |||||||||||||| ||||    
T  26090228 cacatttataaacaacttttgcatttttagattcattaaata 26090269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 12018538 - 12018498
Alignment:
Q  122 aacttttgcttttttagattcattgaatatttgatgtatct 162  Q
    ||||||||| |||||||||||||| |||| |||||||||||    
T  12018538 aacttttgcatttttagattcattaaataattgatgtatct 12018498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 2142 - 2086
Alignment:
Q  16 ataataataaccaatacttcacctattaaacctcattgaattaattaaaataaaaaa 72  Q
    |||||| ||||||| |||||||||||||||  ||||  |||||||||||| ||||||    
T  2142 ataatattaaccaacacttcacctattaaaattcatgcaattaattaaaaaaaaaaa 2086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University