View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6466_low_8 (Length: 339)
Name: NF6466_low_8
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6466_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 40463549 - 40463860
Alignment:
| Q |
12 |
acctgtgtagattttaaccaacaacaagtataggttgtaaagtttaggttagaatatgtgtttctagcacgccgacttgttctcaatatcaatcgctact |
111 |
Q |
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| T |
40463549 |
acctatgtagattttaaccaacaataagaataggttgtaaagtttgggttaaaatatgtgtttctagcacgtcgacttgttctcaatatcaatcgctatt |
40463648 |
T |
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| Q |
112 |
cattggtcatcctcttcaccatctcttccattgactttgtcaactttttatgataagatgttgtcaatgattattttagtcgtcatgttatgtgtaattc |
211 |
Q |
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| T |
40463649 |
cattggtcatcctcttcaccatctcttccattgactttgtcaactttttatgataagatgttgtcaatgattattttagtcgtcatgttatgtgtaattc |
40463748 |
T |
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| Q |
212 |
atcttaaaggaaacctgcaccacttttgcaaattccaaataaaatttaagtgctttccaacaaaaagtggggaaaaaattgattatatatttttcatttc |
311 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40463749 |
atcttaaaggaaacctgcaccactcttgcaaattccaaataaaatttaagtgctttccaacaaaaagtggggaaaaaattgattatatatttttcatttc |
40463848 |
T |
|
| Q |
312 |
gtctctaattta |
323 |
Q |
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|||||||||||| |
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| T |
40463849 |
gtctctaattta |
40463860 |
T |
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