View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6466_low_9 (Length: 337)

Name: NF6466_low_9
Description: NF6466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6466_low_9
NF6466_low_9
[»] chr1 (2 HSPs)
chr1 (7-319)||(31218759-31219064)
chr1 (7-319)||(31213004-31213309)
[»] chr7 (1 HSPs)
chr7 (7-319)||(47896165-47896470)
[»] chr6 (1 HSPs)
chr6 (141-311)||(4958207-4958377)


Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 31219064 - 31218759
Alignment:
Q  7 tagattattctcagcagtcggtcccaaaggttgaggaatggggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaa 106  Q
    ||||| ||||||||||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219064 tagatgattctcagcagttagtcccaaaggttgagga-------ggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaa 31218972  T
Q  107 atttccatacagatcatatcaaaggaaaaaatggagagtccagtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttc 206  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31218971 atttccatacagatcatatcaaaggaaaaagtggagagtccaatcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttc 31218872  T
Q  207 taagattgaagaaggtgagcagaatgctgctgataatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctcca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31218871 taagattgaagaaggtgagcagaatgctgctgataatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctcca 31218772  T
Q  307 cccaccccattta 319  Q
    |||||||||||||    
T  31218771 cccaccccattta 31218759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 31213309 - 31213004
Alignment:
Q  7 tagattattctcagcagtcggtcccaaaggttgaggaatggggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaa 106  Q
    ||||| ||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213309 tagatgattctcagcagtcagtcccaaaggttgagga-------ggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaa 31213217  T
Q  107 atttccatacagatcatatcaaaggaaaaaatggagagtccagtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttc 206  Q
    |||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213216 atttccatacagatcatatcaaaggaaaaagtggagattccattcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttc 31213117  T
Q  207 taagattgaagaaggtgagcagaatgctgctgataatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctcca 306  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31213116 taagtttgaagaaggtgagcagaatgctgctgataatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctcca 31213017  T
Q  307 cccaccccattta 319  Q
    |||||||||||||    
T  31213016 cccaccccattta 31213004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 47896165 - 47896470
Alignment:
Q  7 tagattattctcagcagtcggtcccaaaggttgaggaatggggaggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaa 106  Q
    ||||| ||||||||||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47896165 tagatgattctcagcagttagtcccaaaggttgagga-------ggccaaggagttcctaggaaaaacctcagaggaaatagaaaatgagagtttgcaaa 47896257  T
Q  107 atttccatacagatcatatcaaaggaaaaaatggagagtccagtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttc 206  Q
    |||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47896258 atttccatacagatcatatcaaaggaaaaagtggagaatccaatcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttc 47896357  T
Q  207 taagattgaagaaggtgagcagaatgctgctgataatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctcca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47896358 taagattgaagaaggtgagcagaatgctgctgataatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctcca 47896457  T
Q  307 cccaccccattta 319  Q
    |||||||||||||    
T  47896458 cccaccccattta 47896470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 141 - 311
Target Start/End: Complemental strand, 4958377 - 4958207
Alignment:
Q  141 agagtccagtcacactgagaaagctattgattacattacaaggaagcgctcacgtgcacaaagttctaagattgaagaaggtgagcagaatgctgctgat 240  Q
    |||||||||||||||||||||||||| || | ||| ||||||||||||   ||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  4958377 agagtccagtcacactgagaaagctactggtaacagtacaaggaagcgacaacgtgcacaaacttctaagattgctgaaggtgagcagaatgctgctgat 4958278  T
Q  241 aatgaaggacattcagacggtatcacagctggtgcgcgcaaaaagaaaaggtcaacagttgctccacccac 311  Q
    | |||||||||||||||| ||   |||||||||| |||||| |||||||||||||||||||||||||||||    
T  4958277 agtgaaggacattcagacagttcaacagctggtgggcgcaagaagaaaaggtcaacagttgctccacccac 4958207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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