View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6467_high_1 (Length: 633)
Name: NF6467_high_1
Description: NF6467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6467_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Complemental strand, 9770806 - 9770283
Alignment:
| Q |
11 |
catcatcaccaaagcaaaagaaagagttttttcaaaactttgaaaaagaatcattaagctgtgctctacgaatgttattgtaggcgtggaatcaataatc |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9770806 |
catcaacaccaaagcaaaagaaagagttttttcaaaactttggaaaagaatcattaagctgtgctctacgaatgttattgtaggcgtcgaatcaataatc |
9770707 |
T |
|
| Q |
111 |
acagaagattactaaacgcatattatcatcagaggtaaggactagtgtatgtttaaatccctgttttatttt--tgttcaa------------------- |
189 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
9770706 |
acagaagattactaaacgcatattatcatcagaggtaaggactagtgtatgtttaaatccctgttttttttttttgttcaaaaatatttatatatgagca |
9770607 |
T |
|
| Q |
190 |
-taaataaaatgtaaagtctaaccgtgagatattattttttcttgcaagccttaattaatattttgagaatcatggaagcgttgggagtaatttgggaag |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9770606 |
ataaataaaatgtaaagtctaaccgtgagatattattttttcttgcaagccttaattaatattttgagaatcatggaagcgttgggagtaatttgggaag |
9770507 |
T |
|
| Q |
289 |
ttgtgaaaagtttgttcagttgcacaaatgcacaagctgcctatgtttataagctgcaggagaatctggaatcactgaacaaaatatgggatgatcttca |
388 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9770506 |
ttgcgaaaagtttgttgagttgcacaaatgcacaagctgcctatgtttataagctgcaggagaatctggaatcactgaacaaaatatgggatgatcttca |
9770407 |
T |
|
| Q |
389 |
aaacaaggaaaaggacgtgctaacagaaattggtagagctgaggctgagagcacaagagtgatgaaaaggacagaggaagtgactggttggcttcaagaa |
488 |
Q |
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| T |
9770406 |
aaacaaggaaaaggacgtgctaacagaaattgaaaga------gctgagagcacaagagtgatgaaaaggacaaaggaagtggccagttggcttcaagaa |
9770313 |
T |
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| Q |
489 |
tttcaaaaacttcaagaggtatatttctaa |
518 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
9770312 |
tttcaaaaacttcaagaggtatatttctaa |
9770283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 510 - 561
Target Start/End: Complemental strand, 9770181 - 9770130
Alignment:
| Q |
510 |
tatttctaatactaagtatataaattttatagcaaccaagttcaaaaacttc |
561 |
Q |
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| T |
9770181 |
tatttctaatactaagtatataaattttatagcaaccaagttcaaaaacttc |
9770130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 9e-78; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 260 - 510
Target Start/End: Complemental strand, 36216890 - 36216646
Alignment:
| Q |
260 |
catggaagcgttgggagtaatttgggaagttgtgaaaagtttgttcagttgcacaaatgcacaagctgcctatgtttataagctgcaggagaatctggaa |
359 |
Q |
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|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36216890 |
catggaagcgttgggaataatttgggaagttgcaaaaagtttgttcagttgcacaaatgcacaagctgcctatgtttataagctgcaggagaatctggaa |
36216791 |
T |
|
| Q |
360 |
tcactgaacaaaatatgggatgatcttcaaaacaaggaaaaggacgtgctaacagaaattggtagagctgaggctgagagcacaagagtgatgaaaagga |
459 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||||||| |||||| |||||||| |
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| T |
36216790 |
tcactgaaagaaaaatgggatgatcttcaaaacaaggaaaaggatgtgcagacagaaattgataga------gctgagagcacaggagtgaagaaaagga |
36216697 |
T |
|
| Q |
460 |
cagaggaagtgactggttggcttcaagaatttcaaaaacttcaagaggtat |
510 |
Q |
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| | |||| | |||||||||||| ||||||||||| ||||||||||||| |
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| T |
36216696 |
ctaatgaaggaattggttggcttcaggaatttcaaaagcttcaagaggtat |
36216646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 257 - 519
Target Start/End: Complemental strand, 36234829 - 36234573
Alignment:
| Q |
257 |
aatcatggaagcgttgggagtaatttgggaagttgtgaaaagtttgttcagttgcacaaatgcacaagctgcctatgtttataagctgcaggagaatctg |
356 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| | ||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
36234829 |
aatcatggaagcgttgggagtaatttgggaagttgcgaaaagtttgttcgggtgcgctaatgcacaagctgtctatgtttataagctgcaagagaatctg |
36234730 |
T |
|
| Q |
357 |
gaatcactgaacaaaatatgggatgatcttcaaaacaaggaaaaggacgtgctaacagaaattggtagagctgaggctgagagcacaagagtgatgaaaa |
456 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||| ||||||| ||| ||||| |||||| || | | |||||||||| |||||||||||| |
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| T |
36234729 |
gaattgttgaacaaaaaatgggatgatcttcaaaacaagcaaaaggatgtggtaacaaaaattgata------aagatgagagcacaggagtgatgaaaa |
36234636 |
T |
|
| Q |
457 |
ggacagaggaagtgactggttggcttcaagaatttcaaaaacttcaagaggtatatttctaat |
519 |
Q |
| |
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||||| | |||| || |||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
36234635 |
ggacatatgaagggattggttggcttcaggaatttcaaaaacttcaagaggtatctttctaat |
36234573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 36217081 - 36217009
Alignment:
| Q |
99 |
gaatcaataatcacagaagattactaaacgcatattatcatcagaggtaaggactagtgtatgtttaaatccc |
171 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||||| |||||||||||| |||||| || ||||||||||| |
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| T |
36217081 |
gaattaataatcacacaagattactaaaggcatattataatcagaggtaagaactagtatacgtttaaatccc |
36217009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 5e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 261 - 519
Target Start/End: Original strand, 25467124 - 25467376
Alignment:
| Q |
261 |
atggaagcgttgggagtaatttgggaagttgtgaaaagtttgttcagttgcacaaatgcacaagctgcctatgtttataagctgcaggagaatctggaat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| | || || |||||||||| |
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| T |
25467124 |
atggaagcgttgggagtaatttgggaagttgcaaaatgtttgttcagttgcacaaatgcacaagctgcctatatttataaattacaagaaaatctggaat |
25467223 |
T |
|
| Q |
361 |
cactgaacaaaatatgggatgatcttcaaaacaaggaaaaggacgtgctaacagaaattggtagagctgaggctgagagcacaagagtgatgaaaaggac |
460 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| || | | |||||||||| |||||||||||||||| |
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| T |
25467224 |
cactgaacaaaaaatgggatgatcttcaaaacaaggaaaaggatgtgctaacaaaaattgata------aagatgagagcacaggagtgatgaaaaggac |
25467317 |
T |
|
| Q |
461 |
agaggaagtgactggttggcttcaagaatttcaaaaacttcaagaggtatatttctaat |
519 |
Q |
| |
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| | |||| || |||||||||||| |||||||||| |||||||||||||| || ||||| |
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|
| T |
25467318 |
aaatgaagggattggttggcttcaggaatttcaaacacttcaagaggtatgttgctaat |
25467376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 25466872 - 25467000
Alignment:
| Q |
40 |
tttcaaaactttgaaaaagaatcattaagctgtgctctacgaatgttattgtaggcgtggaatcaa-taatcacagaagattactaaacgcatattatca |
138 |
Q |
| |
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||||||||||||| ||||||||||||||||| || |||| |||||| | |||||| | |||| || |||||||| || ||||||||| ||||| ||||| |
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| T |
25466872 |
tttcaaaactttggaaaagaatcattaagctatgttctataaatgttgtcgtaggcttcgaattaaataatcacacaacattactaaa-gcatagtatca |
25466970 |
T |
|
| Q |
139 |
tcagaggtaaggactagtgtatgtttaaat |
168 |
Q |
| |
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||||||||||| |||| | ||||||||||| |
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|
| T |
25466971 |
tcagaggtaagaactaatatatgtttaaat |
25467000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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