View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6467_high_3 (Length: 498)
Name: NF6467_high_3
Description: NF6467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6467_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 36878731 - 36878264
Alignment:
| Q |
19 |
acctctacatgccttaacttccaacccttgcaatcccaaaacaaagcacaaacaactctatgttgtcaaactttgttgtctctttttggcatagcactag |
118 |
Q |
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| T |
36878731 |
acctctacatgccttaacttccaacccttgcaatcccaaaacaaagcacaaacaactctatgttgtcaaactttgttgtctctttttggcatagcactag |
36878632 |
T |
|
| Q |
119 |
caaaaaatctcaagaagaactctcttttccaactcccaaatctccctacctccacttcatgccttcaagacttccaaactaagctcagttccctttcact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36878631 |
caaaaaatctcaagaagaactctcttttccaactcccaaatctccctacctccacttcatgccttcaagacttccaaactaagctcagttccctttcact |
36878532 |
T |
|
| Q |
219 |
taacaatgaccttgtgtcttcatgctttgatccacttcagtttgttatcactcctaacatatgcgctcgtgttcaatctaagcaagattggatcagcagg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36878531 |
taacaatgaccttgtgtcttcatgctttgatccacttcagtttgttatcactcctaacatatgcgctcgtgttcaatctaagcaagattggatcagcagg |
36878432 |
T |
|
| Q |
319 |
gttggtcctgcaccattgttcaacacttcttgtaaaccggaccttagtgtttctaccaattgtgatgcatgtgttaaccagggactaaaggttcaagaga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36878431 |
gttggtcctgcaccattgttcaacacttcttgtaaaccagaccttagtgtttctaccaattgtgatgcatgtgttaaccagggactaaaggttcaagaga |
36878332 |
T |
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| Q |
419 |
agctgaatcaaattgatgataatagttcacattccaaagattgcttttacttcaccatcatttatatt |
486 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36878331 |
agctgaatcaaattgatggtaatagttcacattccaaagattgcttttacttcaccatcatttatatt |
36878264 |
T |
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