View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6467_high_5 (Length: 339)
Name: NF6467_high_5
Description: NF6467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6467_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 2111909 - 2112225
Alignment:
| Q |
12 |
cacagaccttcatatgaattaaattacactttctaagttttgataggattcagattataaaatatgaagnnnnnnnnnnctaattatataacccgaacaa |
111 |
Q |
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| T |
2111909 |
cacagaccttcatatgaattaaattacgctttctaagttttgacaggattcaaattataaaatatgaagaaaaaaaaaactaattatataacccgaacaa |
2112008 |
T |
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| Q |
112 |
ggacaaaatagaaatttcagaggatatgcgagaagcccgaaggtgggaaaagaaaattataatttctttttccaccctaccaactacccacgccccctcc |
211 |
Q |
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| T |
2112009 |
ggacaaaatagaaatttcagagggtatgtgagaagcccgaaggtgggaaaagaaaattataatttctttttccaccctaccaactaaccacgccccctcc |
2112108 |
T |
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| Q |
212 |
aaaattcccaaaataccccatttggccgcttgacacttttgtacaactaggtttaatataatgaataccaaacttttacaatacgttgcacacttaagtc |
311 |
Q |
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||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2112109 |
aaaattcccaaaata-----------cgttgcacacttttgtacaactaggtttaatataatgaataccaaacttttacaatacgttgcacacttaagtc |
2112197 |
T |
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| Q |
312 |
caacctcatcatttgcaagttttgtttt |
339 |
Q |
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|||| |||||||||| |||||||||||| |
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| T |
2112198 |
caacatcatcatttgtaagttttgtttt |
2112225 |
T |
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