View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6467_low_2 (Length: 547)

Name: NF6467_low_2
Description: NF6467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6467_low_2
NF6467_low_2
[»] chr3 (7 HSPs)
chr3 (9-430)||(2112200-2112626)
chr3 (496-530)||(2112646-2112680)
chr3 (302-353)||(25070682-25070733)
chr3 (302-353)||(26903241-26903292)
chr3 (302-353)||(36617748-36617799)
chr3 (289-341)||(12005417-12005469)
chr3 (285-353)||(24309967-24310035)
[»] chr5 (2 HSPs)
chr5 (80-191)||(14700797-14700906)
chr5 (308-352)||(7607231-7607275)
[»] chr4 (2 HSPs)
chr4 (301-353)||(1112090-1112142)
chr4 (91-190)||(27016979-27017076)
[»] chr2 (2 HSPs)
chr2 (277-353)||(34878578-34878654)
chr2 (277-353)||(4075533-4075609)
[»] chr8 (2 HSPs)
chr8 (297-353)||(29841126-29841182)
chr8 (302-353)||(45486166-45486217)
[»] chr7 (2 HSPs)
chr7 (302-353)||(43265905-43265956)
chr7 (302-353)||(39780969-39781020)
[»] chr1 (3 HSPs)
chr1 (87-194)||(14229827-14229932)
chr1 (302-353)||(1016976-1017027)
chr1 (205-278)||(14229957-14230030)
[»] scaffold0684 (1 HSPs)
scaffold0684 (277-368)||(4181-4272)
[»] scaffold0163 (1 HSPs)
scaffold0163 (277-368)||(3846-3937)
[»] chr6 (2 HSPs)
chr6 (302-353)||(18817003-18817054)
chr6 (302-353)||(24901772-24901823)
[»] scaffold0311 (1 HSPs)
scaffold0311 (301-353)||(806-858)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 2112200 - 2112626
Alignment:
Q  9 acatcatcatttgcaagttttgttttagacaaattattgaccacggttgaactttatccaattttataagtgtgcttgaagtggtggtgcgccatcagct 108  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2112200 acatcatcatttgtaagttttgttttagacaaattattgacgacggttgaactttatccaattttatgagtgtgcttgaagtggtggtgcgccatcagct 2112299  T
Q  109 tcaaaattattttagaagtgttcgaggtgaccccaattttgcaaagttaaaagaggactttcaaaccgttgtgaaaagcttgtgaactacatttgatgtg 208  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2112300 tcaaaattattttagaagtgtttgaggtgatcccaattttgcaaagttaaaagaggactttcaaacctttgtgaaaagcttgtgaactacatttgatgtg 2112399  T
Q  209 gtgtaaaagcttctaaagttagctctggtttcgccaatgacaattacaagtgttgaccgtgttttctc-----agagtcatatatgtaataagataaatg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     |||||||| ||||||||||||||||||    
T  2112400 gtgtaaaagcttctaaagttagctctggtttcgccaatgacaattacaagtgttaaccgtgttttctcaggtaagagtcatttatgtaataagataaatg 2112499  T
Q  304 atcaatggttaaatgattgtcttgtaacttttatagaaacatatgttcttgtaatagttagtaataaattattttcaacaaatgagtgagaaattatttt 403  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2112500 atcaatggttaaatgattgtcttaaaacttttatagaaacatatgttcttgtaatagttagtaataaattattttcaacaaatgagtgagaaattattct 2112599  T
Q  404 ctttataaacttagttgttacttcgtc 430  Q
    |||||||||||||||||||||||||||    
T  2112600 ctttataaacttagttgttacttcgtc 2112626  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 530
Target Start/End: Original strand, 2112646 - 2112680
Alignment:
Q  496 tgaactcttgttttaaacgattcactgaactcact 530  Q
    |||||||||||||||||||||||||||||||||||    
T  2112646 tgaactcttgttttaaacgattcactgaactcact 2112680  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 25070682 - 25070733
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  25070682 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 25070733  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 26903292 - 26903241
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  26903292 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 26903241  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 36617748 - 36617799
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  36617748 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 36617799  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 12005417 - 12005469
Alignment:
Q  289 gtaataagataaatgatcaatggttaaatgattgtcttgtaacttttatagaa 341  Q
    |||| ||||| | ||||||||||||||||||| |||||||||| | |||||||    
T  12005417 gtaacaagatgagtgatcaatggttaaatgatcgtcttgtaacgtatatagaa 12005469  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 24310035 - 24309967
Alignment:
Q  285 atatgtaataagataaatgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||| ||  ||||||  ||||||||||| |||||||||||||  ||||||| | ||||||||    
T  24310035 atatgtaataaaatggatgatcggtggttaaatgaatgtcttgtaacttacatagaaagagatgttctt 24309967  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 14700797 - 14700906
Alignment:
Q  80 gtgcttgaagtggtggtgcgccatcagcttcaaaattattttagaagtgttcgaggtgaccccaattttgcaaagttaaaagaggactttcaaaccgttg 179  Q
    ||||| ||||||||||||| |||| || |||| |||||| |||||| ||||||||||| || ||||||| ||||||| ||  |||||||||| ||| |||    
T  14700797 gtgctggaagtggtggtgcaccattagtttcagaattatgttagaaatgttcgaggtggcctcaattttacaaagttgaa--aggactttcagacctttg 14700894  T
Q  180 tgaaaagcttgt 191  Q
    || |||| ||||    
T  14700895 tgcaaagtttgt 14700906  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 7607231 - 7607275
Alignment:
Q  308 atggttaaatgattgtcttgtaacttttatagaaacatatgttct 352  Q
    |||||||||||| ||||||||||||| |||||||| | |||||||    
T  7607231 atggttaaatgagtgtcttgtaacttatatagaaagagatgttct 7607275  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 1112142 - 1112090
Alignment:
Q  301 atgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||||||||||||||||| |||||||| | ||||||||    
T  1112142 atgatcaatggttaaatgattgtcttgtaacttatatagaaatacatgttctt 1112090  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 27016979 - 27017076
Alignment:
Q  91 ggtggtgcgccatcagcttcaaaattattttagaagtgttcgaggtgaccccaattttgcaaagttaaaagaggactttcaaaccgttgtgaaaagcttg 190  Q
    |||||| |||||||| ||||| |||||| ||| || |||| |||||||| ||||||||||||| || ||  |||||||||| ||  ||||| ||||||||    
T  27016979 ggtggtacgccatcaacttcagaattatgttaaaaatgtttgaggtgactccaattttgcaaatttgaa--aggactttcagacatttgtgcaaagcttg 27017076  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 34878578 - 34878654
Alignment:
Q  277 agagtcatatatgtaataagataaatgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    |||||||  |||||||||| || | |||| |||||||||||||| |||||||||||| |||||||| ||||||||||    
T  34878578 agagtcaactatgtaataatatgagtgattaatggttaaatgatcgtcttgtaacttatatagaaatatatgttctt 34878654  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 353
Target Start/End: Complemental strand, 4075609 - 4075533
Alignment:
Q  277 agagtcatatatgtaataagataaatgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    |||||||| || ||||||| ||   ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  4075609 agagtcatttacgtaataaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 4075533  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 29841126 - 29841182
Alignment:
Q  297 ataaatgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||| | ||||||||||| ||||||||||||| |||||||| ||||||||||    
T  29841126 ataaatgattagtggttaaatgagtgtcttgtaacttatatagaaagatatgttctt 29841182  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 45486166 - 45486217
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  45486166 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 45486217  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 43265905 - 43265956
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | ||||||||||||||||||| | ||||||||    
T  43265905 tgatcaatggttaaatgatcggcttgtaacttttatagaaagagatgttctt 43265956  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 39780969 - 39781020
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  39780969 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 39781020  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 194
Target Start/End: Original strand, 14229827 - 14229932
Alignment:
Q  87 aagtggtggtgcgccatcagcttcaaaattattttagaagtgttcgaggtgaccccaattttgcaaagttaaaagaggactttcaaaccgttgtgaaaag 186  Q
    |||| ||||||||| |||| | ||| |||||  |||||| |||||||||||| |||||||||| |||||| ||  |||| ||||| ||| ||||| || |    
T  14229827 aagttgtggtgcgctatcaacatcataattaagttagaaatgttcgaggtgatcccaattttgaaaagttgaa--aggaatttcagacctttgtgcaacg 14229924  T
Q  187 cttgtgaa 194  Q
    ||||||||    
T  14229925 cttgtgaa 14229932  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 1016976 - 1017027
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  1016976 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 1017027  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 14229957 - 14230030
Alignment:
Q  205 tgtggtgtaaaagcttctaaagttagctctggtttcgccaatgacaattacaagtgttgaccgtgttttctcag 278  Q
    ||||||||| |||||||| |||||||||||| ||| |||  || ||| ||||||||||||  | ||||||||||    
T  14229957 tgtggtgtacaagcttctgaagttagctctgattttgcccgtggcaactacaagtgttgaaagcgttttctcag 14230030  T

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Target: scaffold0684 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 4272 - 4181
Alignment:
Q  277 agagtcatatatgtaataagataaatgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttcttgtaatagttagtaat 368  Q
    ||||||| ||| |||| |||||   ||||||||| | |||||||||||||||||| | |||||||| | ||||||||  |||| ||||||||    
T  4272 agagtcaaataagtaacaagatgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgttcttaaaataattagtaat 4181  T

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Target: scaffold0163 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 368
Target Start/End: Original strand, 3846 - 3937
Alignment:
Q  277 agagtcatatatgtaataagataaatgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttcttgtaatagttagtaat 368  Q
    ||||||| ||| |||| |||||   ||||||||| | |||||||||||||||||| | |||||||| | ||||||||  |||| ||||||||    
T  3846 agagtcaaataagtaacaagatgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgttcttaaaataattagtaat 3937  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 18817054 - 18817003
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  18817054 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 18817003  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Complemental strand, 24901823 - 24901772
Alignment:
Q  302 tgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  24901823 tgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctt 24901772  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 806 - 858
Alignment:
Q  301 atgatcaatggttaaatgattgtcttgtaacttttatagaaacatatgttctt 353  Q
    ||||||||||| |||||||   ||||||||||| |||||||| ||||||||||    
T  806 atgatcaatggctaaatgaccatcttgtaacttatatagaaagatatgttctt 858  T

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