View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6467_low_3 (Length: 512)
Name: NF6467_low_3
Description: NF6467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6467_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Complemental strand, 36960378 - 36959892
Alignment:
| Q |
12 |
aaaggaaaaaatacagattaaaaaa-ttcaatcaaactattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgag |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960378 |
aaaggaaaaaatacagattaaaaaaattcaatcaaactattatttatgtagaagtgcagcggatggagatacgacttcaaaggctgtgcttgattgtgag |
36960279 |
T |
|
| Q |
111 |
gaccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960278 |
gaccctgtgatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtat |
36960179 |
T |
|
| Q |
211 |
tataggtagatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36960178 |
tataggtagatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatc |
36960079 |
T |
|
| Q |
311 |
tgtatgagtacaccaaagtccaactatcattaacctctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcacca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36960078 |
tgtatgagtacaccaaagtccaactatcattaacctctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcacca |
36959979 |
T |
|
| Q |
411 |
ttaccatatagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36959978 |
ttaccatatagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
36959892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 20 - 497
Target Start/End: Complemental strand, 36950236 - 36949758
Alignment:
| Q |
20 |
aaatacagatt-aaaaaattcaatcaaactattatttatgcagaagtgcagccgatggagatacgacttcaaaggctgtgcttgattgtgaggaccctgt |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36950236 |
aaatacagattcaaaaaattcaatcaaactattatttatgtagcagtgcagccgatggagatatgacttcaaaggctgtgcttgattgtgaggaccctgt |
36950137 |
T |
|
| Q |
119 |
gatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36950136 |
gatagtgctatcacttgaagttgaggtcccagtttggttattttcaaaaccagaaatcttagatttagaatacacagaattgaaagatgtattataggta |
36950037 |
T |
|
| Q |
219 |
gatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcacaggcctctgaagatgatctgtatgag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36950036 |
gatgcattcatctgtaatggaagattaggtaatggagcatcaaagttaagcacttgaacaacttgcctaatcataggcctctgaagatgatctgtatgag |
36949937 |
T |
|
| Q |
319 |
tacaccaaagtccaactatcattaacctctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949936 |
tacaccaaagtccaactatcattaacctctctacttccttctcattaaattcaccatataatcttgaatcagctgctttaagaagatcaccattaccata |
36949837 |
T |
|
| Q |
419 |
tagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36949836 |
tagttcgcaaacccaatccaccaagtaaatatgttcttcactaagacttggttcaattgcctttctaccacaagctatt |
36949758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University