View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6467_low_7 (Length: 277)
Name: NF6467_low_7
Description: NF6467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6467_low_7 |
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| [»] scaffold0464 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 32482051 - 32482300
Alignment:
| Q |
17 |
caaacatcagccttttctccacaataaccttttccgcggagaacatctggagctacatacatcggagttccacacattgtttgcagcatgttgttgcagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32482051 |
caaacatcagccttttctccacaataaccttttccatggagaacatctggagctacatacatcggagttccacacattgtttgcagcatgttgttgcggc |
32482150 |
T |
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| Q |
117 |
gatgagattctatgaacgtgctaaacccgaaatcagctattttaagaacaccgttctcgtctaaaagcaaattttcgggcttcaaatcccgatggtacac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32482151 |
gatgagattctatgaacgtgctaaacccgaaatcagctattttaagaacaccgttctcgtctaaaagcaaattttcaggcttcaaatcccgatggtacac |
32482250 |
T |
|
| Q |
217 |
accctttttgtggcaaaaatctagagcacttaccaattgttggaagtatt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32482251 |
accctttttgtggcaaaaatctagagcacttaccaattgttggaagtatt |
32482300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 12728774 - 12729020
Alignment:
| Q |
17 |
caaacatcagccttttctccacaataaccttttccgcggagaacatctggagctacatacatcggagttccacacattgtttgcagcatgttgttgcagc |
116 |
Q |
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||||||||||| ||||||||| || |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
12728774 |
caaacatcagctttttctccataaaaaccttttccacggagaacatatggagctacatacatcggagttccacacattgtttgcaacatgttgt---agc |
12728870 |
T |
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| Q |
117 |
gatgagattctatgaacgtgctaaacccgaaatcagctattttaagaacaccgttctcgtctaaaagcaaattttcgggcttcaaatcccgatggtacac |
216 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| || ||| || |
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| T |
12728871 |
gatgagattctatgactgtgctaaacctgaaatcagctattttaagaacactgttctcgtctaaaagcaagttttcaggcttcaaatcccaattgtagac |
12728970 |
T |
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| Q |
217 |
accctttttgtggcaaaaatctagagcacttaccaattgttggaagtatt |
266 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
12728971 |
acccttcttatggcaaaaatctagagcacttaccaattgttggaagtatt |
12729020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 29 - 266
Target Start/End: Complemental strand, 12730392 - 12730158
Alignment:
| Q |
29 |
ttttctccacaataaccttttccgcggagaacatctggagctacatacatcggagttccacacattgtttgcagcatgttgttgcagcgatgagattcta |
128 |
Q |
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|||||| || |||| |||||||| || ||||||| |||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||| |
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| T |
12730392 |
ttttcttcataatagccttttccacgtagaacatatggagctacatacatcggagttccactcattgtatgcaacatgttgt---agcgatgagattcta |
12730296 |
T |
|
| Q |
129 |
tgaacgtgctaaacccgaaatcagctattttaagaacaccgttctcgtctaaaagcaaattttcgggcttcaaatcccgatggtacacaccctttttgtg |
228 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
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| T |
12730295 |
tgaatgtgctaaacccgaaatcagctattttaagaacactgttctcgtctaaaagcaagttttcgggcttcaaatcccgatggtagacacccttcttgtg |
12730196 |
T |
|
| Q |
229 |
gcaaaaatctagagcacttaccaattgttggaagtatt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
12730195 |
gcaaaaatctagagcacttaccaattgttggaagtatt |
12730158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 13022 - 12776
Alignment:
| Q |
17 |
caaacatcagccttttctccacaataaccttttccgcggagaacatctggagctacatacatcggagttccacacattgtttgcagcatgttgttgcagc |
116 |
Q |
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|||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||| |
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| T |
13022 |
caaacatcagatttttctccataataaccttttccacggagaacatatggagctacatacatcagagttccacacattgtttgcaacatgttgt---agc |
12926 |
T |
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| Q |
117 |
gatgagattctatgaacgtgctaaacccgaaatcagctattttaagaacaccgttctcgtctaaaagcaaattttcgggcttcaaatcccgatggtacac |
216 |
Q |
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|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| || |
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| T |
12925 |
gatgagattctatgaatgtgctaaacacgaaatcagctattttaagaacaccgttctcgtctaaaagcaagttttcaggcttcaaatcccgattgtagac |
12826 |
T |
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| Q |
217 |
accctttttgtggcaaaaatctagagcacttaccaattgttggaagtatt |
266 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12825 |
acccttcttgtggcaaaaatctagagcacttaccaattgttggaagtatt |
12776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 46970395 - 46970166
Alignment:
| Q |
17 |
caaacatcagccttttctccacaataaccttttccgcggagaacatctggagctacatacatc-ggagttccacacattgtttgcagcatgttgttgcag |
115 |
Q |
| |
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||||||||||| || |||||| |||||||||||| | | ||| |||||||||||||| ||| ||||||||||||| |||||||| ||| |||| | | |
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| T |
46970395 |
caaacatcagctttctctccataataaccttttctaagaacaacctctggagctacata-atctggagttccacacaatgtttgcaacattatgttacgg |
46970297 |
T |
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| Q |
116 |
cgatgagattctatgaacgtgctaaacccgaaatcagctattttaagaacaccgttctcgtctaaaagcaaattttcgggcttcaaatcccgatggtaca |
215 |
Q |
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||||| ||||||| ||||| | || |||||||| |||||||| || ||||| ||||| || | |||||| ||||| ||||||||||| |||||||| | |
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| T |
46970296 |
cgatgggattctacaaacgtacccaatccgaaatctgctattttgaggacaccattctcatccagaagcaagttttcaggcttcaaatctcgatggtata |
46970197 |
T |
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| Q |
216 |
caccctttttgtggcaaaaatctagagcact |
246 |
Q |
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||||||| || |||||||||||||||||||| |
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| T |
46970196 |
cacccttgttatggcaaaaatctagagcact |
46970166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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