View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6469_high_3 (Length: 485)

Name: NF6469_high_3
Description: NF6469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6469_high_3
NF6469_high_3
[»] chr2 (16 HSPs)
chr2 (171-466)||(31902092-31902387)
chr2 (171-465)||(18681173-18681478)
chr2 (171-263)||(12793612-12793704)
chr2 (352-437)||(29043993-29044078)
chr2 (171-263)||(915334-915426)
chr2 (377-466)||(9926520-9926607)
chr2 (371-466)||(6173897-6173993)
chr2 (406-445)||(13337590-13337629)
chr2 (406-442)||(10173284-10173320)
chr2 (409-445)||(22884816-22884852)
chr2 (406-442)||(37770355-37770391)
chr2 (406-445)||(4975085-4975124)
chr2 (406-445)||(4992993-4993032)
chr2 (337-427)||(915159-915248)
chr2 (405-445)||(4472282-4472322)
chr2 (409-445)||(27740331-27740367)
[»] chr1 (17 HSPs)
chr1 (171-466)||(4651887-4652188)
chr1 (171-263)||(2988000-2988092)
chr1 (368-464)||(37582405-37582501)
chr1 (377-463)||(2987806-2987892)
chr1 (171-228)||(35250192-35250249)
chr1 (376-470)||(11839527-11839622)
chr1 (404-440)||(32863253-32863289)
chr1 (406-445)||(9313042-9313081)
chr1 (406-445)||(376508-376547)
chr1 (390-445)||(16149100-16149155)
chr1 (396-446)||(29938935-29938986)
chr1 (406-445)||(34775212-34775251)
chr1 (406-445)||(52278622-52278661)
chr1 (404-445)||(50588974-50589016)
chr1 (289-370)||(11839455-11839536)
chr1 (405-445)||(19598989-19599030)
chr1 (406-438)||(27102522-27102554)
[»] chr7 (6 HSPs)
chr7 (171-466)||(38485663-38485966)
chr7 (195-466)||(9349841-9350113)
chr7 (171-328)||(46133091-46133249)
chr7 (406-445)||(3478689-3478728)
chr7 (406-445)||(42532961-42533000)
chr7 (369-441)||(27028465-27028538)
[»] chr3 (13 HSPs)
chr3 (180-463)||(30935060-30935353)
chr3 (326-461)||(1652561-1652696)
chr3 (347-466)||(7966746-7966864)
chr3 (406-445)||(4171084-4171123)
chr3 (393-442)||(32010114-32010163)
chr3 (180-240)||(1652790-1652850)
chr3 (406-438)||(14893270-14893302)
chr3 (362-438)||(38489082-38489160)
chr3 (414-445)||(47946049-47946080)
chr3 (406-445)||(50518791-50518830)
chr3 (377-426)||(22948347-22948397)
chr3 (385-438)||(22948434-22948488)
chr3 (405-442)||(25594213-25594250)
[»] chr8 (6 HSPs)
chr8 (181-466)||(30235796-30236090)
chr8 (171-466)||(35062565-35062860)
chr8 (171-438)||(10552375-10552641)
chr8 (380-465)||(5214988-5215073)
chr8 (186-437)||(32945407-32945662)
chr8 (331-383)||(41791017-41791069)
[»] chr5 (7 HSPs)
chr5 (177-388)||(36979029-36979245)
chr5 (173-465)||(31721787-31722070)
chr5 (362-445)||(31742460-31742543)
chr5 (406-445)||(13953950-13953989)
chr5 (367-458)||(24436129-24436220)
chr5 (406-445)||(26405250-26405289)
chr5 (406-438)||(30097673-30097705)
[»] chr4 (13 HSPs)
chr4 (331-445)||(43373793-43373907)
chr4 (369-441)||(43077270-43077342)
chr4 (171-263)||(43373975-43374067)
chr4 (181-263)||(19432160-19432242)
chr4 (331-466)||(19432304-19432439)
chr4 (52-112)||(19473036-19473096)
chr4 (406-437)||(28967215-28967246)
chr4 (352-465)||(35800729-35800842)
chr4 (406-444)||(41117671-41117709)
chr4 (303-412)||(24739938-24740047)
chr4 (353-445)||(35336856-35336949)
chr4 (171-240)||(35800597-35800666)
chr4 (405-445)||(39420738-39420778)
[»] chr6 (10 HSPs)
chr6 (331-445)||(9224201-9224312)
chr6 (171-262)||(12794212-12794303)
chr6 (368-445)||(6946871-6946949)
chr6 (369-445)||(26534433-26534508)
chr6 (308-462)||(27774844-27774991)
chr6 (347-445)||(12794398-12794496)
chr6 (174-263)||(26215899-26215989)
chr6 (408-445)||(17278164-17278201)
chr6 (28-107)||(28963550-28963630)
chr6 (396-445)||(5746966-5747014)


Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 171 - 466
Target Start/End: Complemental strand, 31902387 - 31902092
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||| | ||||    
T  31902387 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtgactcagtgttggtgttgaggacttggttctcttttacaaggtgt 31902288  T
Q  271 tcgattagtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagtt 369  Q
    ||| |||||||| |||||||||||||  ||||| | | ||||  |||||||||||||||| ||||||||||| ||| |||| |||||||| ||  |||||    
T  31902287 tcggttagtagtggcgacgagtgtttcagatgtcgttttttcactggttggttagtataggagtcagttttatgggttgatgtttattttgat-agagtt 31902189  T
Q  370 gtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaacac 466  Q
    |||||||| ||||||||||||| ||||| ||| |||||||||  ||||| |||||||  |||||||||| ||| |||||||||||||||||||||||    
T  31902188 gtccttattggtgttgatcgcagggttgccttggttggtgttagttttcgggtgttctacctatatacggcgctttgatttgtactttctgtaacac 31902092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 171 - 465
Target Start/End: Original strand, 18681173 - 18681478
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg-tg 269  Q
    |||||||  ||||| | |||||||||||||||||||||||||| |||||||||||||||   |||||||| |||||||| ||||||||||||| | | ||    
T  18681173 aggttgcacggtggtgaaagctgaatgatctttagagaaggagctcttcggatgtggctcaatgttggtgatgaggactaggttctcttttacaagggtg 18681272  T
Q  270 ttcgatt------agtagtagcgacgagtgttttggatgttgtctttcg----gtggttggttagtatagaagtcagttttaggggatgatatttatttt 359  Q
    |||  ||      ||| || |||||||||||||||||||| || |||      ||||||||| ||||||| ||||||||||||||| |||| ||||||||    
T  18681273 ttcttttgaggtgagtggtggcgacgagtgttttggatgtcgtgttttttttagtggttggtaagtataggagtcagttttagggggtgatgtttatttt 18681372  T
Q  360 tatgggagttgtccttatgggtgttgatcgca-aggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttc 458  Q
       ||| ||||| ||||||||||||||| ||| ||||| |||||||| || ||| ||||| ||||||||||||||||||||| ||||  |||||||||||    
T  18681373 agagggtgttgttcttatgggtgttgattgcagaggtt-tctttgttagtatttgttttcgggtgttccgcctatatacgacaccttagtttgtactttc 18681471  T
Q  459 tgtaaca 465  Q
    |||||||    
T  18681472 tgtaaca 18681478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 12793704 - 12793612
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 263  Q
    |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | |  ||||||||||||    
T  12793704 aggttgtgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcggtgttggtgatgagaagtaagttctcttttac 12793612  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 352 - 437
Target Start/End: Complemental strand, 29044078 - 29043993
Alignment:
Q  352 tttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatac 437  Q
    ||||||||  |||| | ||| ||| ||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||||    
T  29044078 tttattttggtgggtgatgtacttttgggtgttgatcgcaggggtgtctttgttggtttttgttttcaggtgttccgcctatatac 29043993  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 915426 - 915334
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 263  Q
    |||||||| ||||| ||||||| |||||| || ||| |||||||||||||||||| |||  ||||||||| |||||| | |||||||| ||||    
T  915426 aggttgcgcggtggtggaagctcaatgattttaagaaaaggagttcttcggatgttgctcagtgttggtgatgaggattgggttctctattac 915334  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 466
Target Start/End: Original strand, 9926520 - 9926607
Alignment:
Q  377 tgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaacac 466  Q
    ||||||||||| ||| ||| || |||||||||||||||||||  |||||||| |||||||||  ||||| ||||||||||| ||||||||    
T  9926520 tgggtgttgatggcagggt-gtatttgttggtgtttattttcgagtgttccgtctatatacggagcctt-atttgtactttttgtaacac 9926607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 6173993 - 6173897
Alignment:
Q  371 tccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttga-tttgtactttctgtaacac 466  Q
    |||||||||||| |||||||| || ||||| | ||||||||| ||||  |||||||| ||||||||||| | ||| | ||||||||||| |||||||    
T  6173993 tccttatgggtgctgatcgcaggggtgtctcttttggtgtttgtttttgggtgttccacctatatacgatgtctttagtttgtactttccgtaacac 6173897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 13337590 - 13337629
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  13337590 ggtgtttattttcaggtgttccacctatatacgacgcctt 13337629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 10173320 - 10173284
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgc 442  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10173320 ggtgtttattttcaggtgttccgcctatatacaacgc 10173284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 22884852 - 22884816
Alignment:
Q  409 gtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22884852 gtttattttcgggtgttccgcctatatacgacgcctt 22884816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 442
Target Start/End: Complemental strand, 37770391 - 37770355
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgc 442  Q
    ||||||||||||| |||||||||||||||||||||||    
T  37770391 ggtgtttattttcgggtgttccgcctatatacgacgc 37770355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 4975085 - 4975124
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4975085 ggtgtttattttcgggtgttcagcctatatacgacgcctt 4975124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 4992993 - 4993032
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  4992993 ggtgtttattttcgggtgttcagcctatatacgacgcctt 4993032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 427
Target Start/End: Complemental strand, 915248 - 915159
Alignment:
Q  337 ttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttcc 427  Q
    |||||||||||||| ||||||||  |  | |||||||||||||||| ||| || | || |||||||||| |||||| ||||| ||||||||    
T  915248 ttttaggggatgatgtttattttggtaagtgttgtccttatgggtggtga-cgtaggggtgtctttgttagtgtttgttttcgggtgttcc 915159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 4472282 - 4472322
Alignment:
Q  405 tggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||||||||||||| | ||||||| ||||||||||||||||    
T  4472282 tggtgtttattttcggatgttccgtctatatacgacgcctt 4472322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 445
Target Start/End: Original strand, 27740331 - 27740367
Alignment:
Q  409 gtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||||||||| |||||||| |||||||||||||||||    
T  27740331 gtttattttcgggtgttccacctatatacgacgcctt 27740367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 171 - 466
Target Start/End: Original strand, 4651887 - 4652188
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtg 269  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||| || ||||||||||||||||||| |  |||    
T  4651887 aggttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtggctcattgttggtgatggggacttggttctcttttacaagggtg 4651986  T
Q  270 ttc------gattagtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttat 362  Q
    |||      | | ||| || | |||||||||||| ||||| | | |||| ||||||||| | ||||| |||||||| ||  ||| ||| |||| |||  |    
T  4651987 ttcttttgaggtgagttgtggtgacgagtgttttagatgtcgttttttcagtggttggtaactataggagtcagttgta--ggaggatgtttagtttgtt 4652084  T
Q  363 gggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgta 462  Q
    ||| ||||| |||||||||||||||| || |||| | ||||||||||||| |||||||||||||||||||||||||  | |||  |||||||||||| ||    
T  4652085 gggtgttgtacttatgggtgttgatcacagggttttttttgttggtgtttgttttcaggtgttccgcctatatacggtgtcttagtttgtactttctata 4652184  T
Q  463 acac 466  Q
    ||||    
T  4652185 acac 4652188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 2988092 - 2988000
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 263  Q
    |||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||    
T  2988092 aggttgtgcggtggtggaagctgaatgatctttagggaaggagttcttcggatgtggctcggtgttggtgatgaggacatggttctcttttac 2988000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 368 - 464
Target Start/End: Original strand, 37582405 - 37582501
Alignment:
Q  368 ttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaac 464  Q
    |||||||||||| ||||||||| |||| ||||||||||| ||||||||||| ||||||||| | ||||||| || |||  |||||||||||| ||||    
T  37582405 ttgtccttatggttgttgatcgtaagggtgtctttgttgatgtttattttcgggtgttccgtcaatatacgtcgtcttagtttgtactttctataac 37582501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 463
Target Start/End: Complemental strand, 2987892 - 2987806
Alignment:
Q  377 tgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaa 463  Q
    ||||||||||| ||| || ||| ||||||||||||| ||||| | ||||||||||||||||| ||||||  ||||||||||| ||||    
T  2987892 tgggtgttgattgcaggggtgtttttgttggtgtttgttttcggatgttccgcctatatacggcgccttagtttgtactttcggtaa 2987806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 35250249 - 35250192
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggc 228  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35250249 aggttacgcggtggtggaagctgaatgatctttagagaaggagttcttcggaggtggc 35250192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 470
Target Start/End: Original strand, 11839527 - 11839622
Alignment:
Q  376 atgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttga-tttgtactttctgtaacacaggt 470  Q
    |||||||||||||||| |  ||| ||||||||  ||| ||||  |||||||||| | ||||||||||||| | |||||||||||||||||||||||    
T  11839527 atgggtgttgatcgcaggaatgtatttgttgggatttgtttttgggtgttccgcttttatacgacgcctttagtttgtactttctgtaacacaggt 11839622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 32863289 - 32863253
Alignment:
Q  404 ttggtgtttattttcaggtgttccgcctatatacgac 440  Q
    |||||||||||||||||||||||||||||||||||||    
T  32863289 ttggtgtttattttcaggtgttccgcctatatacgac 32863253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 9313081 - 9313042
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  9313081 ggtgtttattttcgggtgttccgcctatatacgacgcctt 9313042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 376547 - 376508
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  376547 ggtgtttattttcaggtgttctgcctatatacggcgcctt 376508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 16149100 - 16149155
Alignment:
Q  390 caaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||||||||||||   |||||||||||||  |||||||||||||||||| ||||||    
T  16149100 caaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacggcgcctt 16149155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 446
Target Start/End: Complemental strand, 29938986 - 29938935
Alignment:
Q  396 tgtctttgttggtgttta-ttttcaggtgttccgcctatatacgacgccttg 446  Q
    |||||||||||||||||  |||| |||||||||||||||||| |||||||||    
T  29938986 tgtctttgttggtgttttgtttttaggtgttccgcctatatatgacgccttg 29938935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 34775212 - 34775251
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  34775212 ggtgtttattttcgggtgttccgcctatatacggcgcctt 34775251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 52278622 - 52278661
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  52278622 ggtgtttattttcaggtgttccgcctatatatggcgcctt 52278661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 50589016 - 50588974
Alignment:
Q  404 ttggtgtttatt-ttcaggtgttccgcctatatacgacgcctt 445  Q
    |||||||||||| ||||||||||||||||||||||| ||||||    
T  50589016 ttggtgtttattcttcaggtgttccgcctatatacggcgcctt 50588974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 370
Target Start/End: Original strand, 11839455 - 11839536
Alignment:
Q  289 gagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttg 370  Q
    ||||||| |||||||||| |||  ||||| ||| ||| ||| | ||||||||||| |||||| |||||||| ||||| ||||    
T  11839455 gagtgttatggatgttgttttttagtggtcggtaagtttaggaatcagttttaggagatgatgtttattttgatgggtgttg 11839536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 19598989 - 19599030
Alignment:
Q  405 tggtgttta-ttttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  19598989 tggtgtttacttttcaggtgttccgcctatatacggcgcctt 19599030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 27102522 - 27102554
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacg 438  Q
    ||||||||||||| |||||||||||||||||||    
T  27102522 ggtgtttattttcgggtgttccgcctatatacg 27102554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 171 - 466
Target Start/End: Original strand, 38485663 - 38485966
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac-catgtg 269  Q
    |||||||  ||||| |||||||||||||||||||||||||||||||||| |||||||||   |||||||| | ||||||||||||||||||||  | |||    
T  38485663 aggttgcacggtggtggaagctgaatgatctttagagaaggagttcttcagatgtggctcattgttggtgataaggacttggttctcttttacaaaggtg 38485762  T
Q  270 ttc------gattagtagtagcgacgagtgttttggatg----ttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttt 359  Q
    |||      | | ||| || |||||||||||||||||||    || | |||| ||||||||| | ||||| |||||||||||   || ||| |||| |||    
T  38485763 ttcttttgaggtgagttgtggcgacgagtgttttggatgtcatttttttttcagtggttggtaactataggagtcagtttta---gaagatgtttagttt 38485859  T
Q  360 tatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttct 459  Q
      |||  ||||| |||||||||||||||||||  ||| | ||||||||||||| ||||| |||||||||||||| |||||||||||  ||| ||||||||    
T  38485860 gctggatgttgtacttatgggtgttgatcgcagagttttttttgttggtgtttgttttcgggtgttccgcctatttacgacgccttagtttatactttct 38485959  T
Q  460 gtaacac 466  Q
    |||||||    
T  38485960 gtaacac 38485966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 195 - 466
Target Start/End: Original strand, 9349841 - 9350113
Alignment:
Q  195 atgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg-tgttcgatt------agtagtagcga 287  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||| |||| | |  |||||||||||| | | |||||  ||      |||||| ||||    
T  9349841 atgatatttagagaagaagttcttcggatgtggctcggtgttggtgatgagtattgtgttctcttttacaagggtgttcttttggggtgagtagtggcga 9349940  T
Q  288 cgagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgat 387  Q
    |||||||| ||||||| || ||   ||||||||| |||||||     |||||||||||  ||| ||||||||  |||| |||||||||||||| ||||||    
T  9349941 cgagtgttatggatgtcgttttctagtggttggtaagtatag----gagttttagggg--gatgtttattttggtgggtgttgtccttatgggggttgat 9350034  T
Q  388 cgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaacac 466  Q
     ||| || |||||||||||||| || ||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  9350035 tgcaggggtgtctttgttggtgattttttccaggtgttccgcctatatacggcgccttggtttgtactttttgtaacac 9350113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 171 - 328
Target Start/End: Complemental strand, 46133249 - 46133091
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgt 270  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||| ||||||| || |||||||||| ||| |||| ||||||||||||| | ||||    
T  46133249 aggttgcgtggtgggggaagctgattgatctttagataaagagttctttggatgtgactcggtgttggtgatgatgactgggttctcttttacaaggtgt 46133150  T
Q  271 tcgattagtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtata 328  Q
    | | | |||||| || ||||||||||||||||| | | |||| ||||||||||||||||    
T  46133149 ttggtgagtagtggcaacgagtgttttggatgtcgttttttcagtggttggttagtata 46133091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 3478689 - 3478728
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  3478689 ggtgtttattttcgggtgttccgcctatatacggcgcctt 3478728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 42533000 - 42532961
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  42533000 ggtgtttatttccaggtgttccgcctatatacggcgcctt 42532961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 441
Target Start/End: Original strand, 27028465 - 27028538
Alignment:
Q  369 tgtccttatgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttccgcctatatacgacg 441  Q
    ||||||| ||||||||||||||| || ||||||| |  ||| ||| |||| ||||||||| |||||||||||||    
T  27028465 tgtccttttgggtgttgatcgcatggatgtctttatcagtgttttgtttttaggtgttccacctatatacgacg 27028538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 180 - 463
Target Start/End: Complemental strand, 30935353 - 30935060
Alignment:
Q  180 ggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtgttc------ 272  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||  |||||||||||| |  ||||||          
T  30935353 ggtggtggaagctgaatgatctttagaaaaggagttcttcggatgtggctcggtgttggtgatgaggactgagttctcttttacaagggtgttcttttga 30935254  T
Q  273 gattagtagtagcgacgagtgttttggatgttgtcttt---cggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagtt 369  Q
    | | |||||| |||||||||||| | ||||| || |||   |||||| |||| ||||||  ||||||||||||||| |||| ||||||||  |||  |||    
T  30935253 ggtgagtagtggcgacgagtgttatagatgtcgtttttttccggtggctggtaagtataagagtcagttttagggggtgatgtttattttggtggatgtt 30935154  T
Q  370 gtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaa 463  Q
    |  |||| ||||||||||  || |||||||||||||||||||| ||||| |||||| ||| |||||||||| ||||  |||||| |||| ||||    
T  30935153 gctcttaagggtgttgattacagggttgtctttgttggtgtttgttttcgggtgtttcgcttatatacgacaccttagtttgtattttcagtaa 30935060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 326 - 461
Target Start/End: Complemental strand, 1652696 - 1652561
Alignment:
Q  326 atagaagtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgtt 425  Q
    |||||||||||||||||||| |||| ||||||||  |||| |||||||||||| ||||||||||||||| ||||||||| |||||||| |||| ||||||    
T  1652696 atagaagtcagttttagggggtgatgtttattttggtgggtgttgtccttatgagtgttgatcgcaagggtgtctttgtgggtgttta-tttcgggtgtt 1652598  T
Q  426 ccgcctatatacgacgccttga-tttgtactttctgt 461  Q
    |||||||||||||||||||| | ||||||||||||||    
T  1652597 ccgcctatatacgacgcctttagtttgtactttctgt 1652561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 347 - 466
Target Start/End: Complemental strand, 7966864 - 7966746
Alignment:
Q  347 tgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttg 446  Q
    |||| |||||||| |||||||||||| |||||||||| |||||||| | |||||||||| |||||| ||||| ||||||||| ||||||||| |  |||     
T  7966864 tgatgtttattttgatgggagttgtctttatgggtgtggatcgcaaaggtgtctttgtttgtgtttgttttcgggtgttccgtctatatacggcatctt- 7966766  T
Q  447 atttgtactttctgtaacac 466  Q
    | ||||||||||||||||||    
T  7966765 aattgtactttctgtaacac 7966746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 445
Target Start/End: Original strand, 4171084 - 4171123
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4171084 ggtgtttattttcaggtgttccgcctatatacgacgcctt 4171123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 32010114 - 32010163
Alignment:
Q  393 ggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgc 442  Q
    ||||||||||   ||||||||||||||||| |||||||||||||||||||    
T  32010114 ggttgtcttttaaggtgtttattttcaggtattccgcctatatacgacgc 32010163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1652850 - 1652790
Alignment:
Q  180 ggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtg 240  Q
    ||||| ||||| ||||||||||||||| ||||||||| ||| || ||||| ||||||||||    
T  1652850 ggtggcggaagttgaatgatctttagaaaaggagttcctcgaatttggctcggtgttggtg 1652790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 14893270 - 14893302
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacg 438  Q
    |||||||||||||||||||||||||||||||||    
T  14893270 ggtgtttattttcaggtgttccgcctatatacg 14893302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 438
Target Start/End: Original strand, 38489082 - 38489160
Alignment:
Q  362 tgggagttgtccttatgggtgttgatcgcaaggttgtctttgttgg--tgtttattttcaggtgttccgcctatatacg 438  Q
    |||| ||||| ||| ||||||||||||||| || ||||||||||||  | ||  ||| |||||||||||||||||||||    
T  38489082 tgggtgttgttcttttgggtgttgatcgcatggatgtctttgttgggattttcgtttacaggtgttccgcctatatacg 38489160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 47946049 - 47946080
Alignment:
Q  414 ttttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||||||||||||||||||||||    
T  47946049 ttttcaggtgttccgcctatatacgacgcctt 47946080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 50518830 - 50518791
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  50518830 ggtgtttattttcgggtgttccgcctatatacgacacctt 50518791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 426
Target Start/End: Complemental strand, 22948397 - 22948347
Alignment:
Q  377 tgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttc 426  Q
    ||||||||||||||| || |||||||||||||| ||| |||||||||||||    
T  22948397 tgggtgttgatcgcatgggtgtctttgttggtgttttgttttcaggtgttc 22948347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 438
Target Start/End: Complemental strand, 22948488 - 22948434
Alignment:
Q  385 gatcgcaaggttgtctttgttggtgttta-ttttcaggtgttccgcctatatacg 438  Q
    ||||||| || |||||||||||||||||  |||||||||||||||| ||||||||    
T  22948488 gatcgcatgggtgtctttgttggtgttttgttttcaggtgttccgcatatatacg 22948434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 442
Target Start/End: Complemental strand, 25594250 - 25594213
Alignment:
Q  405 tggtgtttattttcaggtgttccgcctatatacgacgc 442  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  25594250 tggtgtttactttcgggtgttccgcctatatacgacgc 25594213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 181 - 466
Target Start/End: Complemental strand, 30236090 - 30235796
Alignment:
Q  181 gtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg-tgttcgatt--- 276  Q
    |||| ||||||||| ||||||||||| ||| ||||||| ||||||| || ||||||||| ||||||||| | |||||| || | | | |||||| ||       
T  30236090 gtggtggaagctgattgatctttagaaaagaagttctttggatgtgactcggtgttggtattgaggactggtttctctcttgctagggtgttcgtttgtg 30235991  T
Q  277 ---agtagtagcgacgagtgttttggatgttgtct-ttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttgtc 372  Q
       |||||| |||| ||||||| ||||||| || | ||   |||| ||||| ||||| ||||||||||||||| |||| ||||||||  |||| ||||||    
T  30235990 gtgagtagtggcgatgagtgttatggatgtcgtttatttaatggtcggttaatataggagtcagttttagggggtgatgtttattttggtgggtgttgtc 30235891  T
Q  373 cttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttga-tttgtactttctgtaacac 466  Q
    ||| |||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||  ||||| | ||||||| |||||||||||    
T  30235890 cttttgggtgttgatcgcaagggtgtctttgttggtgtttgttttcggatgttccgcctatatacggagcctttagtttgtaccttctgtaacac 30235796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 171 - 466
Target Start/End: Original strand, 35062565 - 35062860
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtg 269  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||    |||||||| |||||||| ||||||||||||| |  |||    
T  35062565 aggttgcgcggtggtggaaggtgaatgatctttagagaaggagttcttcggaggtggcacaatgttggtgatgaggactgggttctcttttacaagggtg 35062664  T
Q  270 ttc------gattagtagtagcgacgagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatg 363  Q
    |||      | | |||||| |||||||||||| |||||||||| |||  ||||||||||||||||  |||||||||||||||| |   ||| ||||  ||    
T  35062665 ttctcttgaggtgagtagtggcgacgagtgttatggatgttgttttttagtggttggttagtatatgagtcagttttaggggagg--tttttttttggtg 35062762  T
Q  364 ggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaa 463  Q
     | | ||||||| ||||||||||||||| ||      |||||||||||| ||||| ||||||| | ||||||||| ||  || ||||||| |||||||||    
T  35062763 tgtgatgtccttttgggtgttgatcgcaggg-----gttgttggtgtttgttttcgggtgttctgtctatatacggcgtattaatttgtattttctgtaa 35062857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 438
Target Start/End: Original strand, 10552375 - 10552641
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttacca-tgtg 269  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||   ||||||| | |||||||| ||||||||||||| |  |||    
T  10552375 aggttgcgttgtggtggaagctgaatgatctttagagaagaagttcttcggaggtggcacagtgttggagatgaggactgggttctcttttacaagggtg 10552474  T
Q  270 ttc------gattagtagtagcgacgagtgttttggatgttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatg 363  Q
    |||      | | |||||| ||||||||| || ||||||| || |||  ||||||| ||||||||  ||||||||||||||||||   ||||||||  |     
T  10552475 ttcttttgaggtgagtagtggcgacgagttttatggatgtcgttttttagtggttgcttagtatatgagtcagttttaggggatg---tttattttggtt 10552571  T
Q  364 ggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacg 438  Q
    || |||||||||| |||||||||| ||| ||      |||||||||||| ||||| | |||||||||||||||||    
T  10552572 ggtgttgtccttaagggtgttgattgcaggg-----gttgttggtgtttgttttcggatgttccgcctatatacg 10552641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 5215073 - 5214988
Alignment:
Q  380 gtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaaca 465  Q
    |||||||||| | || |||||||||| | |||| ||||| |||||| |||||||||||| ||||||  ||||||||||||||||||    
T  5215073 gtgttgatcgtaggggtgtctttgttagagtttgttttcgggtgtttcgcctatatacggcgccttagtttgtactttctgtaaca 5214988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 186 - 437
Target Start/End: Complemental strand, 32945662 - 32945407
Alignment:
Q  186 ggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac-catgtgttc------gattag 278  Q
    ||||||||||||||||||||| ||| |||||||| |||||| || |||||||||| ||| |||| | |||| ||||||  | ||||||      | | ||    
T  32945662 ggaagctgaatgatctttagaaaagaagttcttcagatgtgactcggtgttggtgatgatgactggtttcttttttacaaaagtgttcttttgaggtgag 32945563  T
Q  279 tagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttg-tcctta 376  Q
    |||| |||| ||||||| ||||||| | |||||| |  || |||  |||||| ||||||||||| ||| |||| ||||||||  |||  |||| ||||||    
T  32945562 tagtggcgatgagtgttatggatgtcgttctttcag-cgtcggtaggtataggagtcagttttaagggctgatgtttattttggtggatgttgatcctta 32945464  T
Q  377 tgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatac 437  Q
    || ||||||||||||||| |||||| | |    ||| ||||| ||||||||||||||||||    
T  32945463 tgagtgttgatcgcaagggtgtcttaggt----tttgttttcgggtgttccgcctatatac 32945407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 383
Target Start/End: Complemental strand, 41791069 - 41791017
Alignment:
Q  331 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgt 383  Q
    ||||||||||||||| |||| ||||||||  |||| |||||||||||| ||||    
T  41791069 agtcagttttagggggtgatgtttattttggtgggggttgtccttatgagtgt 41791017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 177 - 388
Target Start/End: Original strand, 36979029 - 36979245
Alignment:
Q  177 cgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatgtgttcgatt 276  Q
    ||||||||| |||||||||||||| ||| |||| |||||||| ||||||||||||||||||||  | |||||| |||||||||||| || ||||| | |     
T  36979029 cgtggtgggagaagctgaatgatcattaaagaatgagttctttggatgtggcttggtgttggtaataaggactaggttctctttta-caggtgttaggtg 36979127  T
Q  277 agtagtagcgacgagtgttttggatgttg-tctttcggtggttggttagtatagaagtcagttt-----taggggatgatatttatttttatgggagttg 370  Q
    |||||| ||||| |||||||||||||||| | |||| ||||||||| ||||||  |||||||||     | ||||  ||| |||||||| ||||||||||    
T  36979128 agtagtggcgaccagtgttttggatgttgttttttcagtggttggtaagtataagagtcagtttgtgtgtggggggggatgtttattttgatgggagttg 36979227  T
Q  371 tccttatgggtgttgatc 388  Q
    ||||||||| ||||||||    
T  36979228 tccttatggatgttgatc 36979245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 465
Target Start/End: Original strand, 31721787 - 31722070
Alignment:
Q  173 gttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttaccatg----- 267  Q
    |||||| ||||| ||||| ||| |||||||||||||| |||||||| |||||||||| | ||||||||  |||||||  |||||||||||| | |         
T  31721787 gttgcgcggtggtggaagttgattgatctttagagaatgagttctttggatgtggctcgatgttggtgacgaggactgagttctcttttacaagggtgtt 31721886  T
Q  268 tgttcga--ttagtagtagcgacgagtgttttggatgttgtcttt-cggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgg 364  Q
    | || ||  | |||||| |||||||||||| ||||||| || ||| | ||||||||| ||||||| ||||||||||||||  |||| ||||||||    |    
T  31721887 tttttgaggtgagtagtggcgacgagtgttatggatgtcgttttttcagtggttggtaagtataggagtcagttttaggg--tgatgtttatttt----g 31721980  T
Q  365 gagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgtaac 464  Q
    |           |||||||||||| || || || ||||||| |||||| ||||| ||||||||| ||||||||| ||||||  |||||||||||||||||    
T  31721981 g-----------tgggtgttgatcacatgggtgcctttgttagtgtttgttttcgggtgttccgtctatatacggcgccttagtttgtactttctgtaac 31722069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 445
Target Start/End: Original strand, 31742460 - 31742543
Alignment:
Q  362 tgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||| ||||||||||||||| ||||||||||||  |||||||  ||||||| ||||| ||||||||||||||||||| ||||||    
T  31742460 tgggtgttgtccttatgggttttgatcgcaagggagtctttgcaggtgtttgttttcgggtgttccgcctatatacggcgcctt 31742543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 13953989 - 13953950
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13953989 ggtgtttattttcaggtgttccgcctatatacggcgcctt 13953950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 24436129 - 24436220
Alignment:
Q  367 gttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttc 458  Q
    |||||||||||| |||||||||| | |  |||||||||| |||||| ||||| | ||||||| ||||||| |||| |||  |||||||||||    
T  24436129 gttgtccttatgagtgttgatcgtaggagtgtctttgttagtgtttgttttcggatgttccgactatatatgacgtcttagtttgtactttc 24436220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 445
Target Start/End: Complemental strand, 26405289 - 26405250
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  26405289 ggtgtttattttcgggtgttccgactatatacgacgcctt 26405250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 438
Target Start/End: Original strand, 30097673 - 30097705
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacg 438  Q
    ||||||||||||| |||||||||||||||||||    
T  30097673 ggtgtttattttcgggtgttccgcctatatacg 30097705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 43373907 - 43373793
Alignment:
Q  331 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcc 430  Q
    ||||||||||||||| |||| ||||||||  |||| |||||||||||| ||||||||| || || ||||||||||||  ||| ||||| |||||| ||||    
T  43373907 agtcagttttagggggtgatgtttattttggtgggtgttgtccttatgtgtgttgatcacatgggtgtctttgttgggttttgttttcgggtgtttcgcc 43373808  T
Q  431 tatatacgacgcctt 445  Q
    ||||||| |||||||    
T  43373807 tatatacaacgcctt 43373793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 369 - 441
Target Start/End: Original strand, 43077270 - 43077342
Alignment:
Q  369 tgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacg 441  Q
    ||||||| || |||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||    
T  43077270 tgtccttttgagtgttgatcgcaggggtgtctttgttggtgtttattttcaggtgttctgcctatatacgacg 43077342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 43374067 - 43373975
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 263  Q
    |||||||| ||||| ||||||||| ||||||||||| || ||||||||| || ||| || |||||||||| ||| |||||| |||||||||||    
T  43374067 aggttgcgcggtggtggaagctgattgatctttagaaaatgagttcttcagaggtgactcggtgttggtgatgatgacttgtttctcttttac 43373975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 19432160 - 19432242
Alignment:
Q  181 gtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 263  Q
    |||| |||||||||||||| ||| ||  ||||||| ||||| |||| ||||||||||||| ||||||||   |||||||||||    
T  19432160 gtggtggaagctgaatgatatttggaagaggagttattcggttgtgacttggtgttggtgatgaggactgatttctcttttac 19432242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 466
Target Start/End: Original strand, 19432304 - 19432439
Alignment:
Q  331 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgca-aggttgtctttgttggtgtttattttcaggtgttccgc 429  Q
    ||||||||||||||| |||| ||||||||  |||| ||| ||| ||||||||||||| ||| |||  | |||||||||  ||| ||||| | |||||||     
T  19432304 agtcagttttagggggtgatctttattttggtgggtgttatccctatgggtgttgatggcagagg--ggctttgttgggttttgttttcggatgttccgt 19432401  T
Q  430 ctatatacgacgcc-ttgatttgtactttctgtaacac 466  Q
    ||||||||| |||| ||  ||||||| |||||||||||    
T  19432402 ctatatacggcgccttttgtttgtaccttctgtaacac 19432439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 19473036 - 19473096
Alignment:
Q  52 ttggtgatattaatgtattttatagtagagagaacgatgaatgaatgattaaaatatatta 112  Q
    |||||||||||||||||||||| || ||||| || |||  |||||||||||||||| ||||    
T  19473036 ttggtgatattaatgtattttagaggagagaaaatgatacatgaatgattaaaataaatta 19473096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 437
Target Start/End: Original strand, 28967215 - 28967246
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatac 437  Q
    ||||||||||||||||||||||||||||||||    
T  28967215 ggtgtttattttcaggtgttccgcctatatac 28967246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 465
Target Start/End: Original strand, 35800729 - 35800842
Alignment:
Q  352 tttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcc-ttgattt 450  Q
    |||||||| ||||| ||| || |||||||||||||||||| || | | || |||||||||| ||||  ||||||||| ||||||||  |||| ||  |||    
T  35800729 tttattttgatgggtgttttc-ttatgggtgttgatcgcatgggtattttcgttggtgtttgtttttcggtgttccgtctatatacagcgccgttatttt 35800827  T
Q  451 gtactttctgtaaca 465  Q
    ||||||||| |||||    
T  35800828 gtactttctttaaca 35800842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 406 - 444
Target Start/End: Complemental strand, 41117709 - 41117671
Alignment:
Q  406 ggtgtttattttcaggtgttccgcctatatacgacgcct 444  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  41117709 ggtgtttattttcgggtgttccgcctatatacgatgcct 41117671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 412
Target Start/End: Complemental strand, 24740047 - 24739938
Alignment:
Q  303 ttgtctttcggtggttggttagtatagaagtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtcttt 402  Q
    |||| |||| ||||| | ||| |||| |||||| ||||||| |  ||| ||||||||  |||| ||| |||||||| ||| ||||||||||| ||| |||    
T  24740047 ttgtttttcagtggtcgattaatatacaagtcatttttaggtggggatgtttattttagtgggtgttatccttatgagtggtgatcgcaagggtgttttt 24739948  T
Q  403 gttggtgttt 412  Q
     |||||||||    
T  24739947 attggtgttt 24739938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 445
Target Start/End: Original strand, 35336856 - 35336949
Alignment:
Q  353 ttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||||||  |||| |||||||||| | |||||||| |||    |||||||||||||| ||||||||| | ||||||| ||||||||| ||||||    
T  35336856 ttattttggtgggtgttgtccttacgagtgttgattgcatatgtgtctttgttggtgttttattttcggatgttccgtctatatacggcgcctt 35336949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 35800597 - 35800666
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtg 240  Q
    ||||| || ||||| |||| ||||||||||||| |  ||||||||||| |||||||||| | ||||||||    
T  35800597 aggtttcgcggtggtggaacctgaatgatctttggtaaaggagttctttggatgtggctcgttgttggtg 35800666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 39420778 - 39420738
Alignment:
Q  405 tggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    
T  39420778 tggtgttcattttcgggtgttccgcctatatacgacacctt 39420738  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 331 - 445
Target Start/End: Original strand, 9224201 - 9224312
Alignment:
Q  331 agtcagttttaggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcc 430  Q
    |||||||||||||||  ||| |||||||| |||||  |   ||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||  |    
T  9224201 agtcagttttagggg--gatgtttattttgatgggtttatcccttatggg-gttgatcgcagggatgtctttgttggtgtttattttcgggtgttccttc 9224297  T
Q  431 tatatacgacgcctt 445  Q
    |||||||||| ||||    
T  9224298 tatatacgacacctt 9224312  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 12794212 - 12794303
Alignment:
Q  171 aggttgcgtggtgggggaagctgaatgatctttagagaaggagttcttcggatgtggcttggtgttggtgttgaggacttggttctctttta 262  Q
    |||||||| ||||| |||||| || ||||||||||| ||||| |||||| |||||| || |||||||| |||||||||| | ||||||||||    
T  12794212 aggttgcgcggtggtggaagcagattgatctttagaaaaggatttcttcagatgtgactcggtgttggggttgaggactggtttctctttta 12794303  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 445
Target Start/End: Complemental strand, 6946949 - 6946871
Alignment:
Q  368 ttgtccttatgggtgttgatcgcaaggttgtctttgttggtg-tttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||  |||||||  ||||||||| ||||||    
T  6946949 ttgtccttatgggtgttgatcgcaagggtgtctttgttggtgttttgttttcgagtgttccatctatatacggcgcctt 6946871  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 445
Target Start/End: Complemental strand, 26534508 - 26534433
Alignment:
Q  369 tgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||| |||||||| || ||| || ||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  26534508 tgtccttttgggtgtttattgcaggggtgtctttgttggtattg-ttttcaggtgttccgcctatatacgacgcctt 26534433  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 462
Target Start/End: Original strand, 27774844 - 27774991
Alignment:
Q  308 tttcggtggttggttagtatagaagtcagtttt-aggggatgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttg 406  Q
    |||| ||||||||| | |||||||||||||||| ||||||||   ||||||||  |||| |||||     ||||||||||||| | |  |||||||||||    
T  27774844 tttcagtggttggtaaatatagaagtcagtttttaggggatg---tttattttggtgggtgttgt-----tgggtgttgatcgtaggagtgtctttgttg 27774935  T
Q  407 gtgtttattttcaggtgttccgcctatatacgacgccttgatttgtactttctgta 462  Q
    |||||| ||||  | ||||||  ||||||||||||||||  |||||||||| ||||    
T  27774936 gtgtttgtttttggatgttccatctatatacgacgccttagtttgtactttttgta 27774991  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 445
Target Start/End: Original strand, 12794398 - 12794496
Alignment:
Q  347 tgatatttatttttatgggagttgtccttatgggtgttgatcgcaaggttgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    |||| ||||||||  |||  ||||||||| |||||||||||||||    ||||||||||||||||  ||||| | ||||||| ||||||||| ||||||    
T  12794398 tgatgtttattttggtggatgttgtccttttgggtgttgatcgcagatgtgtctttgttggtgttcgttttcggatgttccgtctatatacggcgcctt 12794496  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 26215989 - 26215899
Alignment:
Q  174 ttgcgtggtgggggaagctgaatgatctttagagaaggagtt-cttcggatgtggcttggtgttggtgttgaggacttggttctcttttac 263  Q
    ||||| ||||| ||||||||| |||||||| || |||||||| ||||  ||||||||  ||||||||| |||||||| | |||||||||||    
T  26215989 ttgcgcggtggtggaagctgattgatctttggaaaaggagtttcttcaaatgtggctcagtgttggtgatgaggactagtttctcttttac 26215899  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 445
Target Start/End: Complemental strand, 17278201 - 17278164
Alignment:
Q  408 tgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  17278201 tgtttattttcgggtgttccgcctatatacgacgcctt 17278164  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 28963550 - 28963630
Alignment:
Q  28 ggtttcacttgagtgatataa-tttttggtgatattaatgtattttatagtagagagaacgatgaatgaatgattaaaata 107  Q
    |||||||||||||||| || | |||||||||| |||| || |||||| |  |||||||| || ||||||||||||||||||    
T  28963550 ggtttcacttgagtgacattagtttttggtgacattagtgcattttagatgagagagaatgaagaatgaatgattaaaata 28963630  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 445
Target Start/End: Original strand, 5746966 - 5747014
Alignment:
Q  396 tgtctttgttggtgtttattttcaggtgttccgcctatatacgacgcctt 445  Q
    ||||||| ||| |||| ||||| |||||||||||||||||||||||||||    
T  5746966 tgtctttattgatgttcatttt-aggtgttccgcctatatacgacgcctt 5747014  T

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