View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6469_high_6 (Length: 433)
Name: NF6469_high_6
Description: NF6469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6469_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 47121147 - 47120736
Alignment:
| Q |
7 |
gtataattacaatttgtttgttagaatcatggtctacaaaatcacatgtgattctgacaacttgcaagtaaatattaactttggttagtaaaattaccaa |
106 |
Q |
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| T |
47121147 |
gtataattacaatttgtttgttagaatcatggtctacaaaatcacatgtgattctgacaacttgcaagtaaatattaactttggttagtaaaattaccaa |
47121048 |
T |
|
| Q |
107 |
aacggtgtggagacccatttctttacccgcaatgatgtttcgaacactgtcatccagaaacaactgcaaaacaagagatacattttcatcgatgagattt |
206 |
Q |
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| T |
47121047 |
aacggtgtggagacccatttctttacccgcaatgatgtttcgaacactgtcatccagaaacaactgcaaaacaagagatacattttcatcgatgagattt |
47120948 |
T |
|
| Q |
207 |
aattgtcatacatggaacaacctctcattcataaagattgtgactataacttcgtaaaaggtattgtagtactagtaggaaacattaannnnnnnaataa |
306 |
Q |
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| T |
47120947 |
aattgtcatatatggaacaacctctcattcataaagattgtgactataacttcgtaaaaggtattgtagtactagtaggaaacattaatttttttaataa |
47120848 |
T |
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| Q |
307 |
tatttaatgcaactccaaagttaactaagcattaactattttttagaacaaatttatcctcaacaactcaattctttttcaaactcaaatccaaatcaac |
406 |
Q |
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| T |
47120847 |
tatttaatgcaactccaaagttaactaagcattaactattttttagaacaaatttatcctcaacaactcaattctttttcaaactcaaatccaaatcaac |
47120748 |
T |
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| Q |
407 |
accataattata |
418 |
Q |
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| T |
47120747 |
accataattata |
47120736 |
T |
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Back To:
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 26486706 - 26486658
Alignment:
| Q |
340 |
aactattttttagaacaaatttatcctcaacaactcaattctttttcaaa |
389 |
Q |
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||||||||||| ||||||||||||| | || ||||||||||||||||||| |
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| T |
26486706 |
aactatttttt-gaacaaatttatctttaagaactcaattctttttcaaa |
26486658 |
T |
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