View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6469_high_8 (Length: 292)
Name: NF6469_high_8
Description: NF6469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6469_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 2788060 - 2788340
Alignment:
| Q |
1 |
acgcacatttcctcatttttctgttttgcttcatttatttccttgcttattgttacaatttcatggtttgttgagctgtactagtcatgaataatcattg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2788060 |
acgcacatttccccatttttctgttttgcttcatttatttccttgcttattgttacaatttcatggtttgttgagctgtactagtcatgaataatcattg |
2788159 |
T |
|
| Q |
101 |
attactttccctaataattctattaatcactttcaggagtcttagaaagctgaaatacatagaaaaatttcatgaatacgggttaacattcaagaagcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2788160 |
attactttccctaataattctattaatcactttcaggagtcttagaaagctgaaatacatagaaaaatttcatgaatacgggttaacattcaagaagcat |
2788259 |
T |
|
| Q |
201 |
tgtgaagaagggaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaatacctggaaatgatgat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2788260 |
tgtgaagaagggaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaatacctggaaatgatgat |
2788340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 113 - 264
Target Start/End: Complemental strand, 2841315 - 2841164
Alignment:
| Q |
113 |
aataattctattaatcactttcaggagtcttagaaagctgaaatacatagaaaaatttcatgaatacgggttaacattcaagaagcattgtgaagaaggg |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2841315 |
aataattctattaatcacttttaggagtcttgggaagctgacatacatagataaatttcatgaatacgggttaacattcaagaagcattatgaagaaggg |
2841216 |
T |
|
| Q |
213 |
aaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2841215 |
aaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
2841164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 113 - 264
Target Start/End: Complemental strand, 2846002 - 2845851
Alignment:
| Q |
113 |
aataattctattaatcactttcaggagtcttagaaagctgaaatacatagaaaaatttcatgaatacgggttaacattcaagaagcattgtgaagaaggg |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2846002 |
aataattctattaatcacttttaggagtcttgggaagctgacatacatagataaatttcatgaatacgggttaacattcaagaagcattatgaagaaggg |
2845903 |
T |
|
| Q |
213 |
aaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2845902 |
aaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaa |
2845851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 124 - 266
Target Start/End: Original strand, 7363723 - 7363865
Alignment:
| Q |
124 |
taatcactttcaggagtcttagaaagctgaaatacatagaaaaatttcatgaatacgggttaacattcaagaagcattgtgaagaagggaaattaccaaa |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
7363723 |
taatcactttcaggagtcttaggaagcttaaatacatagataaatttcatgaatacggattaacattcaagaagtattgtgaagaagggaaattactaaa |
7363822 |
T |
|
| Q |
224 |
ctacgtggtgatagaacaaagatttttcgacttgttatcaata |
266 |
Q |
| |
|
|||| ||||||||||||||| | |||| |||||||||||||| |
|
|
| T |
7363823 |
ctacttggtgatagaacaaaaaaatttcaacttgttatcaata |
7363865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 2829526 - 2829591
Alignment:
| Q |
212 |
gaaattaccaaactacgtggtgatagaacaaagatttttcgacttgttatcaatacctggaaatga |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2829526 |
gaaattaccaaactacgtggtgatagaacaaagatttttcgacatgttatcaatacctgggaatga |
2829591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 2829490 - 2829530
Alignment:
| Q |
116 |
aattctattaatcactttcaggagtcttagaaagctgaaat |
156 |
Q |
| |
|
|||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
2829490 |
aattttatttatcactttcaggagtcttaggaagctgaaat |
2829530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University