View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6469_low_1 (Length: 934)
Name: NF6469_low_1
Description: NF6469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6469_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 497 - 738
Target Start/End: Original strand, 20966773 - 20967014
Alignment:
| Q |
497 |
atatagggagcgacttcattgaaaacattttattcatgagaaaaacaggaacaattgataatagacgtgagatacaaatcaatgacttggattaagaata |
596 |
Q |
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| T |
20966773 |
atatagggagcgacttcattgaaaacattttattcatgagaaaaacaagaacaattgataatagacgtgagatacaaatcaatgacttggattaagaata |
20966872 |
T |
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| Q |
597 |
cactcttaatcatctggtgagccacaattatattatttattacnnnnnnnnnngtcctcttcgcgttatacttttcttgttttcgtgctggtcgaggctt |
696 |
Q |
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| T |
20966873 |
cactcttaatcatctggtgagccacaattatattatttattactttcttttgtgtcctcttcgcgttatacttttcttgttttggtggtggtcggggctt |
20966972 |
T |
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| Q |
697 |
gaacctcggatcttacattgtcagtaccaactgagctaagtt |
738 |
Q |
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| T |
20966973 |
gaacctcggatcttacattgtcaccatcaactgagctaagtt |
20967014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 197 - 438
Target Start/End: Complemental strand, 20967014 - 20966773
Alignment:
| Q |
197 |
aacttagctcagttggtactgacaatgtaagatccgaggttcaagcctcgaccagcacgaaaacaagaaaagtataacgcgaagaggacnnnnnnnnnng |
296 |
Q |
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| T |
20967014 |
aacttagctcagttgatggtgacaatgtaagatccgaggttcaagccccgaccaccaccaaaacaagaaaagtataacgcgaagaggacacaaaagaaag |
20966915 |
T |
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| Q |
297 |
taataaataatataattgtggctcaccagatgattaagagtgtattcttaatccaagtcattgatttgtatctcacgtctattatcaattgttcctgttt |
396 |
Q |
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| T |
20966914 |
taataaataatataattgtggctcaccagatgattaagagtgtattcttaatccaagtcattgatttgtatctcacgtctattatcaattgttcttgttt |
20966815 |
T |
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| Q |
397 |
ttctcatgaataaaatgttttcaatgaagtcgctccctatat |
438 |
Q |
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| T |
20966814 |
ttctcatgaataaaatgttttcaatgaagtcgctccctatat |
20966773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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